Literature DB >> 10655412

Diversity within the VP4 gene of rotavirus P[8] strains: implications for reverse transcription-PCR genotyping.

M Iturriza-Gómara1, J Green, D W Brown, U Desselberger, J J Gray.   

Abstract

A degenerate version (1T1-D) of the rotavirus P[8]-specific primer (1T-1) allowed strains previously untypeable due to the accumulation of point mutations at the primer binding site to be P typed by reverse transcription-PCR. Sequencing of the cDNA followed by sequence alignment and phylogenetic analysis identified lineages and sublineages within the rotavirus P[8] types, while the use of 1T-1 or 1T-1D primers did not yield viral clusters in any particular lineage.

Entities:  

Mesh：

Substances：

Year:  2000        PMID： 10655412      PMCID： PMC86240     

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  13 in total

1.  Comparison of specific and random priming in the reverse transcriptase polymerase chain reaction for genotyping group A rotaviruses.

Authors:  M Iturriza-Gomara; J Green; D W Brown; U Desselberger; J J Gray
Journal:  J Virol Methods       Date:  1999-03       Impact factor: 2.014

2.  Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens.

Authors:  V Gouvea; R I Glass; P Woods; K Taniguchi; H F Clark; B Forrester; Z Y Fang
Journal:  J Clin Microbiol       Date:  1990-02       Impact factor: 5.948

3.  Short sequences define genetic lineages: phylogenetic analysis of group A rotaviruses based on partial sequences of genome segments 4 and 9.

Authors:  L Maunula; C H von Bonsdorff
Journal:  J Gen Virol       Date:  1998-02       Impact factor: 3.891

4.  Genetic variation in VP7 gene of human rotavirus serotype 2 (G2 type) isolated in Japan, China, and Pakistan.

Authors:  L Wen; H Ushijima; J Kakizawa; Z Y Fang; O Nishio; S Morikawa; T Motohiro
Journal:  Microbiol Immunol       Date:  1995       Impact factor: 1.955

5.  Minimal homology requirements for PCR primers.

Authors:  R Sommer; D Tautz
Journal:  Nucleic Acids Res       Date:  1989-08-25       Impact factor: 16.971

6.  G3P2 rotaviruses causing diarrhoeal disease in neonates differ in VP4, VP7 and NSP4 sequence from G3P2 strains causing asymptomatic neonatal infection.

Authors:  C D Kirkwood; B S Coulson; R F Bishop
Journal:  Arch Virol       Date:  1996       Impact factor: 2.574

7.  Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies.

Authors:  S Kwok; D E Kellogg; N McKinney; D Spasic; L Goda; C Levenson; J J Sninsky
Journal:  Nucleic Acids Res       Date:  1990-02-25       Impact factor: 16.971

8.  Divergence of VP7 genes of G1 rotaviruses isolated from infants vaccinated with reassortant rhesus rotaviruses.

Authors:  Q Jin; R L Ward; D R Knowlton; Y B Gabbay; A C Linhares; R Rappaport; P A Woods; R I Glass; J R Gentsch
Journal:  Arch Virol       Date:  1996       Impact factor: 2.574

9.  Extension of base mispairs by Taq DNA polymerase: implications for single nucleotide discrimination in PCR.

Authors:  M M Huang; N Arnheim; M F Goodman
Journal:  Nucleic Acids Res       Date:  1992-09-11       Impact factor: 16.971

10.  Identification of group A rotavirus gene 4 types by polymerase chain reaction.

Authors:  J R Gentsch; R I Glass; P Woods; V Gouvea; M Gorziglia; J Flores; B K Das; M K Bhan
Journal:  J Clin Microbiol       Date:  1992-06       Impact factor: 5.948
View more
  50 in total

1.  Reassortment in vivo: driving force for diversity of human rotavirus strains isolated in the United Kingdom between 1995 and 1999.

Authors:  M Iturriza-Gómara; B Isherwood; U Desselberger; J Gray
Journal:  J Virol       Date:  2001-04       Impact factor: 5.103

2.  Amino acid substitution within the VP7 protein of G2 rotavirus strains associated with failure to serotype.

Authors:  M I Gómara; D Cubitt; U Desselberger; J Gray
Journal:  J Clin Microbiol       Date:  2001-10       Impact factor: 5.948

3.  Group A rotavirus in sewage samples from Barcelona and Cairo: emergence of unusual genotypes.

Authors:  Cristina Villena; Waled Morsy El-Senousy; F Xavier Abad; Rosa M Pintó; Albert Bosch
Journal:  Appl Environ Microbiol       Date:  2003-07       Impact factor: 4.792

4.  Sequencing and phylogenetic analysis of human genotype P[6] rotavirus strains detected in Hungary provides evidence for genetic heterogeneity within the P[6] VP4 gene.

Authors:  Krisztián Bányai; Vito Martella; Ferenc Jakab; Béla Melegh; György Szücs
Journal:  J Clin Microbiol       Date:  2004-09       Impact factor: 5.948

5.  Genetic variability among serotype G4 Italian human rotaviruses.

Authors:  S Arista; G M Giammanco; S De Grazia; C Colomba; V Martella
Journal:  J Clin Microbiol       Date:  2005-03       Impact factor: 5.948

6.  Development of a microtiter plate hybridization-based PCR-enzyme-linked immunosorbent assay for identification of clinically relevant human group A rotavirus G and P genotypes.

Authors:  Norma Santos; Shinjiro Honma; Maria do Carmo S T Timenetsky; Alexandre C Linhares; Hiroshi Ushijima; George E Armah; Jon R Gentsch; Yasutaka Hoshino
Journal:  J Clin Microbiol       Date:  2007-12-05       Impact factor: 5.948

7.  Characterization of VP6 genes from rotavirus strains collected in the United States from 1996-2002.

Authors:  Tara K Kerin; Erin M Kane; Roger I Glass; Jon R Gentsch
Journal:  Virus Genes       Date:  2007-06-13       Impact factor: 2.332

8.  Evidence of VP7 and VP4 intra-lineage diversification in G4P[8] Italian human rotaviruses.

Authors:  Maria Cristina Medici; Fabio Tummolo; Paola Guerra; Maria Cristina Arcangeletti; Carlo Chezzi; Flora De Conto; Adriana Calderaro
Journal:  Virus Genes       Date:  2013-12-19       Impact factor: 2.332

9.  Characterization of rotavirus strains in a Danish population: high frequency of mixed infections and diversity within the VP4 gene of P[8] strains.

Authors:  T K Fischer; J Eugen-Olsen; A G Pedersen; K Mølbak; B Böttiger; K Rostgaard; N M Nielsen
Journal:  J Clin Microbiol       Date:  2005-03       Impact factor: 5.948

10.  Unexpected substitution of dominant rotavirus G genotypes in French hospitalized children over five consecutive seasons.

Authors:  A de Rougemont; J Kaplon; P Lebon; F Huet; F Denis; S Alain; L Fourcade; J Grosjean; M-J El-Hajje; D Gendrel; P Pothier
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2008-10-15       Impact factor: 3.267
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.