Literature DB >> 10648141

Fast and accurate characterization of biological membranes by EPR spectral simulations of nitroxides.

J Strancar1, M Sentjurc, M Schara.   

Abstract

A method by which it is possible to characterize the membranes of biological samples on the basis of the EPR spectral lineshape simulation of membrane-dissolved nitroxide spin probes is described. The presented simulation procedure allows the determination of the heterogeneous structure of biological membranes and fluidity characteristics of individual membrane domains. The method can deal with isotropic and anisotropic orientations of nitroxides introduced into the biological samples described by restricted fast motion with a correlation time between 0.01 and 10 ns. The linewidths of the Lorentzian lineshapes are calculated in a restricted fast-motion approximation. In the special case of samples with high concentrations of nitroxides or in the presence of paramagnetic ions, the lineshapes are calculated directly from the exchange-coupled Bloch equations. The parameters describing ordering, relaxation, polarity, and the portions of the individual spectral components are extracted by optimizing the simulated spectra to the experimental spectrum with either a Simplex or a Monte Carlo algorithm. To improve the algorithm's efficiency, a new way of characterizing the goodness of fits is introduced. The new criterion is based on the standard least-squares function, but with special weighting of the partial sums. Its benefits are confirmed with membrane spectral simulation. Two classes of examples-simulation and optimizations of synthetic spectra to evaluate the accuracy of the optimization algorithms and simulation and optimization of EPR spectra of nitroxides in liposome suspensions in the presence of a broadening agent and in human leukocytes are shown. Copyright 2000 Academic Press.

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Year:  2000        PMID: 10648141     DOI: 10.1006/jmre.1999.1919

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  12 in total

1.  Soft picture of lateral heterogeneity in biomembranes.

Authors:  J Strancar; T Koklic; Z Arsov
Journal:  J Membr Biol       Date:  2003-11-15       Impact factor: 1.843

2.  New EPR method for cellular surface characterization.

Authors:  J Strancar; M Schara; S Pecar
Journal:  J Membr Biol       Date:  2003-05-01       Impact factor: 1.843

3.  Cell membrane fluidity related to electroporation and resealing.

Authors:  Masa Kanduser; Marjeta Sentjurc; Damijan Miklavcic
Journal:  Eur Biophys J       Date:  2005-10-08       Impact factor: 1.733

4.  Site-directed spin-labeling study of the light-harvesting complex CP29.

Authors:  Aleh A Kavalenka; Ruud B Spruijt; Cor J A M Wolfs; Janez Strancar; Roberta Croce; Marcus A Hemminga; Herbert van Amerongen
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

Review 5.  SDSL-ESR-based protein structure characterization.

Authors:  Janez Strancar; Aleh Kavalenka; Iztok Urbancic; Ajasja Ljubetic; Marcus A Hemminga
Journal:  Eur Biophys J       Date:  2009-08-11       Impact factor: 1.733

6.  ESR spectroscopy investigation of the denaturation process of soybean peroxidase induced by guanidine hydrochloride, DMSO or heat.

Authors:  Barbara Boscolo; Enzo Laurenti; Elena Ghibaudi
Journal:  Protein J       Date:  2006-09       Impact factor: 2.371

7.  Motional restrictions of membrane proteins: a site-directed spin labeling study.

Authors:  David Stopar; Janez Strancar; Ruud B Spruijt; Marcus A Hemminga
Journal:  Biophys J       Date:  2006-08-11       Impact factor: 4.033

Review 8.  Temperature- and pH-induced structural changes in the membrane of the hyperthermophilic archaeon Aeropyrum pernix K1.

Authors:  Natasa Poklar Ulrih; Urska Adamlje; Marjanca Nemec; Marjeta Sentjurc
Journal:  J Membr Biol       Date:  2007-08-23       Impact factor: 1.843

9.  The membrane lateral domain approach in the studies of lipid-protein interaction of GPI-anchored bovine erythrocyte acetylcholinesterase.

Authors:  Zoran Arsov; Milan Schara; Matjaz Zorko; Janez Strancar
Journal:  Eur Biophys J       Date:  2004-07-06       Impact factor: 1.733

10.  Salt-induced changes in lipid composition and membrane fluidity of halophilic yeast-like melanized fungi.

Authors:  Martina Turk; Laurence Méjanelle; Marjeta Sentjurc; Joan O Grimalt; Nina Gunde-Cimerman; Ana Plemenitas
Journal:  Extremophiles       Date:  2003-11-13       Impact factor: 2.395

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