Literature DB >> 10642607

Biosynthesis of heparin/heparan sulfate: kinetic studies of the glucuronyl C5-epimerase with N-sulfated derivatives of the Escherichia coli K5 capsular polysaccharide as substrates.

A Hagner-McWhirter1, H H Hannesson, P Campbell, J Westley, L Rodén, U Lindahl, J P Li.   

Abstract

The D-glucuronyl C5-epimerase involved in the biosynthesis of heparin and heparan sulfate was investigated with focus on its substrate specificity, its kinetic properties, and a comparison of epimerase preparations from the Furth mastocytoma and bovine liver, which synthesize heparin and heparan sulfate, respectively. New substrates for the epimerase were prepared from the capsular polysaccharide of Escherichia coli K5, which had been labeled at C5 of its D-glucuronic and N-acetyl-D-glucosamine moieties by growing the bacteria in the presence of D-[5-(3)H]glucose. Following complete or partial ( approximately 50%) N-deacetylation of the polysaccharide by hydrazinolysis, the free amino groups were sulfated by treatment with trimethylamine.SO(3)complex, which yielded products that were recognized as substrates by the epimerase and released tritium from C5 of the D-glucuronyl residues upon incubation with the enzyme. Comparison of the kinetic properties of the two substrates showed that the fully N-sulfated derivative was the best substrate in terms of its K(m)value, which was significantly lower than that of its partially N-acetylated counterpart. The V(max)values for the E.coli polysaccharide derivatives were essentially the same but were both lower than that of the O-desulfated [(3)H]heparin used in our previous studies. Surprisingly, the apparent K(m)values for all three substrates increased with increasing enzyme concentration. The reason for this phenomenon is not entirely clear at present. Partially purified C5-epimerase preparations from the Furth mastocytoma and bovine liver, respectively, behaved similarly in terms of their reactivity towards the various substrates, but the variation in apparent K(m)values with enzyme concentration precluded a detailed comparison of their kinetic properties.

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Year:  2000        PMID: 10642607     DOI: 10.1093/glycob/10.2.159

Source DB:  PubMed          Journal:  Glycobiology        ISSN: 0959-6658            Impact factor:   4.313


  10 in total

1.  Structural and functional study of D-glucuronyl C5-epimerase.

Authors:  Yi Qin; Jiyuan Ke; Xin Gu; Jianping Fang; Wucheng Wang; Qifei Cong; Jie Li; Jinzhi Tan; Joseph S Brunzelle; Chenghai Zhang; Yi Jiang; Karsten Melcher; Jin-ping Li; H Eric Xu; Kan Ding
Journal:  J Biol Chem       Date:  2015-01-07       Impact factor: 5.157

2.  Hydrogen/deuterium exchange-LC-MS approach to characterize the action of heparan sulfate C5-epimerase.

Authors:  Ponnusamy Babu; Xylophone V Victor; Emily Nelsen; Thao Kim Nu Nguyen; Karthik Raman; Balagurunathan Kuberan
Journal:  Anal Bioanal Chem       Date:  2011-05-15       Impact factor: 4.142

Review 3.  Applications of isotopes in advancing structural and functional heparanomics.

Authors:  Vy M Tran; Thao K N Nguyen; Karthik Raman; Balagurunathan Kuberan
Journal:  Anal Bioanal Chem       Date:  2010-09-14       Impact factor: 4.142

4.  A novel bacterial enzyme with D-glucuronyl C5-epimerase activity.

Authors:  John Raedts; Magnus Lundgren; Servé W M Kengen; Jin-Ping Li; John van der Oost
Journal:  J Biol Chem       Date:  2013-07-03       Impact factor: 5.157

5.  Elucidating the unusual reaction kinetics of D-glucuronyl C5-epimerase.

Authors:  Deepika Vaidyanathan; Elena Paskaleva; Troy Vargason; Xia Ke; Scott A McCallum; Robert J Linhardt; Jonathan S Dordick
Journal:  Glycobiology       Date:  2020-10-21       Impact factor: 4.313

6.  Uncovering biphasic catalytic mode of C5-epimerase in heparan sulfate biosynthesis.

Authors:  Juzheng Sheng; Yongmei Xu; Steven B Dulaney; Xuefei Huang; Jian Liu
Journal:  J Biol Chem       Date:  2012-04-23       Impact factor: 5.157

7.  The human D-glucuronyl C5-epimerase gene is transcriptionally activated through the beta-catenin-TCF4 pathway.

Authors:  Giancarlo Ghiselli; Amit Agrawal
Journal:  Biochem J       Date:  2005-09-01       Impact factor: 3.857

8.  Substrate binding mode and catalytic mechanism of human heparan sulfate d-glucuronyl C5 epimerase.

Authors:  Claire Debarnot; Yoan R Monneau; Véronique Roig-Zamboni; Vincent Delauzun; Christine Le Narvor; Emeline Richard; Jérôme Hénault; Adeline Goulet; Firas Fadel; Romain R Vivès; Bernard Priem; David Bonnaffé; Hugues Lortat-Jacob; Yves Bourne
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-14       Impact factor: 11.205

9.  Occurrence of L-iduronic acid and putative D-glucuronyl C5-epimerases in prokaryotes.

Authors:  John Raedts; Servé W M Kengen; John van der Oost
Journal:  Glycoconj J       Date:  2011-02-24       Impact factor: 2.916

10.  Enzyme overexpression - an exercise toward understanding regulation of heparan sulfate biosynthesis.

Authors:  Jianping Fang; Tianyi Song; Ulf Lindahl; Jin-Ping Li
Journal:  Sci Rep       Date:  2016-08-11       Impact factor: 4.379

  10 in total

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