Literature DB >> 10639071

Glycosidase mechanisms: anatomy of a finely tuned catalyst.

D L Zechel1, S G Withers.   

Abstract

In order to accelerate the hydrolysis of glycosidic bonds by factors approaching 10(17)-fold, glycosidases have evolved finely tuned active sites optimally configured for transition-state stabilization. Structural analyses of various enzyme complexes representing stable intermediates along the reaction coordinate, in conjunction with detailed mechanistic studies on wild-type and mutant enzymes, have delineated the contributions of nucleophilic and general acid/base catalysis, as well as the roles of noncovalent interactions, to these impressive rate enhancements.

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Year:  2000        PMID: 10639071     DOI: 10.1021/ar970172+

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  129 in total

1.  Imaging of enzyme replacement therapy using PET.

Authors:  Christopher P Phenix; Brian P Rempel; Karen Colobong; Doris J Doudet; Michael J Adam; Lorne A Clarke; Stephen G Withers
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

2.  Paenibacillus sp. TS12 glucosylceramidase: kinetic studies of a novel sub-family of family 3 glycosidases and identification of the catalytic residues.

Authors:  Krisztina Paal; Makoto Ito; Stephen G Withers
Journal:  Biochem J       Date:  2004-02-15       Impact factor: 3.857

3.  A direct NMR method for the measurement of competitive kinetic isotope effects.

Authors:  Jefferson Chan; Andrew R Lewis; Michel Gilbert; Marie-France Karwaski; Andrew J Bennet
Journal:  Nat Chem Biol       Date:  2010-04-25       Impact factor: 15.040

4.  Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.

Authors:  Qun Wan; Jerry M Parks; B Leif Hanson; Suzanne Zoe Fisher; Andreas Ostermann; Tobias E Schrader; David E Graham; Leighton Coates; Paul Langan; Andrey Kovalevsky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

Review 5.  Repair of 8-oxoG:A mismatches by the MUTYH glycosylase: Mechanism, metals and medicine.

Authors:  Douglas M Banda; Nicole N Nuñez; Michael A Burnside; Katie M Bradshaw; Sheila S David
Journal:  Free Radic Biol Med       Date:  2017-01-10       Impact factor: 7.376

6.  Enzyme-coupled assay for beta-xylosidase hydrolysis of natural substrates.

Authors:  Kurt Wagschal; Diana Franqui-Espiet; Charles C Lee; George H Robertson; Dominic W S Wong
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

7.  Structural and mechanistic analysis of a β-glycoside phosphorylase identified by screening a metagenomic library.

Authors:  Spencer S Macdonald; Ankoor Patel; Veronica L C Larmour; Connor Morgan-Lang; Steven J Hallam; Brian L Mark; Stephen G Withers
Journal:  J Biol Chem       Date:  2018-01-09       Impact factor: 5.157

8.  Crystal structure and snapshots along the reaction pathway of a family 51 alpha-L-arabinofuranosidase.

Authors:  Klaus Hövel; Dalia Shallom; Karsten Niefind; Valery Belakhov; Gil Shoham; Timor Baasov; Yuval Shoham; Dietmar Schomburg
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

9.  The effect of electrostatic interactions on conformational equilibria of multiply substituted tetrahydropyran oxocarbenium ions.

Authors:  Michael T Yang; K A Woerpel
Journal:  J Org Chem       Date:  2009-01-16       Impact factor: 4.354

10.  Observing lysozyme's closing and opening motions by high-resolution single-molecule enzymology.

Authors:  Maxim V Akhterov; Yongki Choi; Tivoli J Olsen; Patrick C Sims; Mariam Iftikhar; O Tolga Gul; Brad L Corso; Gregory A Weiss; Philip G Collins
Journal:  ACS Chem Biol       Date:  2015-03-20       Impact factor: 5.100

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