Literature DB >> 10601031

Yeast autonomously replicating sequence binding factor is involved in nucleotide excision repair.

S H Reed1, M Akiyama, B Stillman, E C Friedberg.   

Abstract

Nucleotide excision repair (NER) in yeast is effected by the concerted action of a large complex of proteins. Recently, we identified a stable subcomplex containing the yeast Rad7 and Rad16 proteins. Here, we report the identification of autonomously replicating sequence binding factor 1 (ABF1) as a component of the Rad7/Rad16 NER subcomplex. Yeast ABF1 protein is encoded by an essential gene required for DNA replication, transcriptional regulation, and gene silencing. We show that ABF1 plays a direct role in NER in vitro. Additionally, consistent with a role of ABF1 protein in NER in vivo, we show that certain temperature-sensitive abf1 mutant strains that are defective in DNA replication are specifically defective in the removal of photoproducts by NER and are sensitive to killing by ultraviolet (UV) radiation. These studies define a novel and unexpected role for ABF1 protein during NER in yeast.

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Year:  1999        PMID: 10601031      PMCID: PMC317179          DOI: 10.1101/gad.13.23.3052

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  27 in total

1.  The OBF1 protein and its DNA-binding site are important for the function of an autonomously replicating sequence in Saccharomyces cerevisiae.

Authors:  S S Walker; S C Francesconi; B K Tye; S Eisenberg
Journal:  Mol Cell Biol       Date:  1989-07       Impact factor: 4.272

2.  Gene conversion of the mating-type locus in Saccharomyces cerevisiae.

Authors:  A J Klar; S Fogel; K Lusnak
Journal:  Genetics       Date:  1979-07       Impact factor: 4.562

3.  A yeast silencer contains sequences that can promote autonomous plasmid replication and transcriptional activation.

Authors:  A H Brand; G Micklem; K Nasmyth
Journal:  Cell       Date:  1987-12-04       Impact factor: 41.582

4.  Purification of a yeast protein that binds to origins of DNA replication and a transcriptional silencer.

Authors:  J F Diffley; B Stillman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

5.  The RAD7, RAD16, and RAD23 genes of Saccharomyces cerevisiae: requirement for transcription-independent nucleotide excision repair in vitro and interactions between the gene products.

Authors:  Z Wang; S Wei; S H Reed; X Wu; J Q Svejstrup; W J Feaver; R D Kornberg; E C Friedberg
Journal:  Mol Cell Biol       Date:  1997-02       Impact factor: 4.272

6.  Yeast Rad7-Rad16 complex, specific for the nucleotide excision repair of the nontranscribed DNA strand, is an ATP-dependent DNA damage sensor.

Authors:  S N Guzder; P Sung; L Prakash; S Prakash
Journal:  J Biol Chem       Date:  1997-08-29       Impact factor: 5.157

7.  Similarity between the transcriptional silencer binding proteins ABF1 and RAP1.

Authors:  J F Diffley; B Stillman
Journal:  Science       Date:  1989-11-24       Impact factor: 47.728

8.  The N-degron protein degradation strategy for investigating the function of essential genes: requirement for replication protein A and proliferating cell nuclear antigen proteins for nucleotide excision repair in yeast extracts.

Authors:  W Huang; W J Feaver; A E Tomkinson; E C Friedberg
Journal:  Mutat Res       Date:  1998-09-11       Impact factor: 2.433

9.  Identification of sites required for repression of a silent mating type locus in yeast.

Authors:  J B Feldman; J B Hicks; J R Broach
Journal:  J Mol Biol       Date:  1984-10-05       Impact factor: 5.469

10.  Four genes responsible for a position effect on expression from HML and HMR in Saccharomyces cerevisiae.

Authors:  J Rine; I Herskowitz
Journal:  Genetics       Date:  1987-05       Impact factor: 4.562

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  27 in total

1.  DNA repair in a yeast origin of replication: contributions of photolyase and nucleotide excision repair.

Authors:  B Suter; R E Wellinger; F Thoma
Journal:  Nucleic Acids Res       Date:  2000-05-15       Impact factor: 16.971

2.  Distinct functions of the ubiquitin-proteasome pathway influence nucleotide excision repair.

Authors:  Thomas G Gillette; Shirong Yu; Zheng Zhou; Raymond Waters; Stephen Albert Johnston; Simon H Reed
Journal:  EMBO J       Date:  2006-06-07       Impact factor: 11.598

3.  Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and sporulation in yeast.

Authors:  Ulrich Schlecht; Ionas Erb; Philippe Demougin; Nicolas Robine; Valérie Borde; Erik van Nimwegen; Alain Nicolas; Michael Primig
Journal:  Mol Biol Cell       Date:  2008-02-27       Impact factor: 4.138

Review 4.  Mechanisms for ATP-dependent chromatin remodelling: the means to the end.

Authors:  Andrew Flaus; Tom Owen-Hughes
Journal:  FEBS J       Date:  2011-09-08       Impact factor: 5.542

5.  Identification of a multifunctional domain in autonomously replicating sequence-binding factor 1 required for transcriptional activation, DNA replication, and gene silencing.

Authors:  Tsuyoshi Miyake; Christian M Loch; Rong Li
Journal:  Mol Cell Biol       Date:  2002-01       Impact factor: 4.272

6.  The Sir1 protein's association with a silenced chromosome domain.

Authors:  K A Gardner; C A Fox
Journal:  Genes Dev       Date:  2001-01-15       Impact factor: 11.361

Review 7.  DNA repair mechanisms and the bypass of DNA damage in Saccharomyces cerevisiae.

Authors:  Serge Boiteux; Sue Jinks-Robertson
Journal:  Genetics       Date:  2013-04       Impact factor: 4.562

8.  The 19S complex of the proteasome regulates nucleotide excision repair in yeast.

Authors:  T G Gillette; W Huang; S J Russell; S H Reed; S A Johnston; E C Friedberg
Journal:  Genes Dev       Date:  2001-06-15       Impact factor: 11.361

9.  tRNAHis 5-methylcytidine levels increase in response to several growth arrest conditions in Saccharomyces cerevisiae.

Authors:  Melanie A Preston; Sonia D'Silva; Yoshiko Kon; Eric M Phizicky
Journal:  RNA       Date:  2012-12-18       Impact factor: 4.942

10.  A major role for the Plasmodium falciparum ApiAP2 protein PfSIP2 in chromosome end biology.

Authors:  Christian Flueck; Richard Bartfai; Igor Niederwieser; Kathrin Witmer; Blaise T F Alako; Suzette Moes; Zbynek Bozdech; Paul Jenoe; Hendrik G Stunnenberg; Till S Voss
Journal:  PLoS Pathog       Date:  2010-02-26       Impact factor: 6.823

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