Literature DB >> 10592222

ExInt: an Exon/Intron database.

M Sakharkar1, M Long, T W Tan, S J de Souza.   

Abstract

The Exon/Intron (ExInt) database incorporates information on the exon/intron structure of eukaryotic genes. Features in the database include: intron nucleotide sequence, amino acid sequence of the corresponding protein, position of the introns at the amino acid level and intron phase. From ExInt, we have also generated four additional databases each with ExInt entries containing predicted introns, introns experimentally defined, organelle introns or nuclear introns. ExInt is accessible through a retrieval system with pointers to GenBank. The database can be searched by keywords, locus name, NID, accession number or length of the protein. ExInt is freely accessible at http://intron.bic.nus.edu.sg/exint/exint.html

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Year:  2000        PMID: 10592222      PMCID: PMC102468          DOI: 10.1093/nar/28.1.191

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  5 in total

1.  Sequence identification of 2,375 human brain genes.

Authors:  M D Adams; M Dubnick; A R Kerlavage; R Moreno; J M Kelley; T R Utterback; J W Nagle; C Fields; J C Venter
Journal:  Nature       Date:  1992-02-13       Impact factor: 49.962

2.  Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach.

Authors:  E C Uberbacher; R J Mural
Journal:  Proc Natl Acad Sci U S A       Date:  1991-12-15       Impact factor: 11.205

Review 3.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

4.  Prediction of complete gene structures in human genomic DNA.

Authors:  C Burge; S Karlin
Journal:  J Mol Biol       Date:  1997-04-25       Impact factor: 5.469

5.  Intron phase correlations and the evolution of the intron/exon structure of genes.

Authors:  M Long; C Rosenberg; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1995-12-19       Impact factor: 11.205

  5 in total
  5 in total

1.  ExInt: an Exon Intron Database.

Authors:  M Sakharkar; F Passetti; J E de Souza; M Long; S J de Souza
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis.

Authors:  Ari B Kahn; Michael C Ryan; Hongfang Liu; Barry R Zeeberg; D Curtis Jamison; John N Weinstein
Journal:  BMC Bioinformatics       Date:  2007-03-05       Impact factor: 3.169

3.  JuncDB: an exon-exon junction database.

Authors:  Michal Chorev; Lotem Guy; Liran Carmel
Journal:  Nucleic Acids Res       Date:  2015-10-30       Impact factor: 16.971

4.  Variant Library Annotation Tool (VaLiAnT): an oligonucleotide library design and annotation tool for Saturation Genome Editing and other Deep Mutational Scanning experiments.

Authors:  Luca Barbon; Victoria Offord; Elizabeth J Radford; Adam P Butler; Sebastian S Gerety; David J Adams; Hong Kee Tan; Andrew J Waters
Journal:  Bioinformatics       Date:  2021-11-16       Impact factor: 6.937

5.  Comprehensive database and evolutionary dynamics of U12-type introns.

Authors:  Devlin C Moyer; Graham E Larue; Courtney E Hershberger; Scott W Roy; Richard A Padgett
Journal:  Nucleic Acids Res       Date:  2020-07-27       Impact factor: 16.971

  5 in total

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