Literature DB >> 1059113

Protein hydration changes during catalysis: a new mechanism of enzymic rate-enhancement and ion activation/inhibition of catalysis.

P S Low, G N Somero.   

Abstract

There exists a linear correlation between the effect of a salt on the rate of an enzymic reaction and its effect on the activation volume (delta V++) of the reaction. Salts that increase delta V++ invariably decrease the rate of the reaction, and vice versa. The salt effects on reaction rate are, however, much larger than would be predicted solely on the basis of pressure-volume work changes deriving from the observed alterations in delta V++. Different inorganic salts affect reaction rates and activation volumes in a manner that reflects the salts' positions in the Hofmeister series. These observations, taken in conjunction with data on the effects of salts on protein functional group (aminoacid side-chains and peptide linkages) hydration, lead us to propose the following hypothesis to account for salt activation and inhibition of catalysis. Aminoacid side-chains and peptide linkages located on or near the protein surface change their exposure to water during conformational events in catalysis. These protein group transfers are accompanied by large volume and energy changes that are due largely to changes in the organization of water around these groups. When these transfer processes occur during the rate-limiting step in catalysis, these energy and volume changes can contribute to the free energy of activation (delta G++) and the activation volume of the reaction. By influencing the degree to which water can organize around transferred protein groups, salts can modify both the delta G++ (rate) and the delta V++ of a reaction.

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Year:  1975        PMID: 1059113      PMCID: PMC432980          DOI: 10.1073/pnas.72.9.3305

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

Review 1.  Conformational mechanisms for free energy transduction in protein systems: old ideas and new facts.

Authors:  R Lumry
Journal:  Ann N Y Acad Sci       Date:  1974-02-18       Impact factor: 5.691

2.  Studies on the hydration of Escherichia coli ribosomes by nuclear magnetic resonance.

Authors:  J P White; I D Kuntz; C R Cantor
Journal:  J Mol Biol       Date:  1972-03-14       Impact factor: 5.469

3.  The mechanism of muscle contraction.

Authors:  A Szent-Györgyi
Journal:  Proc Natl Acad Sci U S A       Date:  1974-09       Impact factor: 11.205

4.  Monomethylammonium ion as a magnetic resonance probe for monovalent cation activators. The monovalent cation in pyruvate kinase catalysis.

Authors:  T Nowak
Journal:  J Biol Chem       Date:  1973-10-25       Impact factor: 5.157

5.  Pressure denaturation of metmyoglobin.

Authors:  A Zipp; W Kauzmann
Journal:  Biochemistry       Date:  1973-10-09       Impact factor: 3.162

Review 6.  The catalytic and regulatory properties of enzymes.

Authors:  D E Koshland; K E Neet
Journal:  Annu Rev Biochem       Date:  1968       Impact factor: 23.643

7.  Synergistic activation of beta-galactosidase by Na and Cs.

Authors:  M C Neville; G N Ling
Journal:  Arch Biochem Biophys       Date:  1967-03-20       Impact factor: 4.013

8.  Letter: A molecular enzyme model based on oriented energy transfer.

Authors:  S Damjanovich; B Somogyi
Journal:  J Theor Biol       Date:  1973-10       Impact factor: 2.691

9.  Thermodynamics of protein denaturation. Effect of pressu on the denaturation of ribonuclease A.

Authors:  J F Brandts; R J Oliveira; C Westort
Journal:  Biochemistry       Date:  1970-02-17       Impact factor: 3.162

10.  Comparison of molecular structures of proteins: helix content; distribution of apolar residues.

Authors:  I M Klotz
Journal:  Arch Biochem Biophys       Date:  1970-06       Impact factor: 4.013

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  17 in total

1.  Microbial water stress.

Authors:  A D Brown
Journal:  Bacteriol Rev       Date:  1976-12

2.  Hydration effects of heparin on antithrombin probed by osmotic stress.

Authors:  Maria P McGee; Jie Liang; James Luba
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

3.  Activation volume and energetic properties of the binding of CO to hemoproteins.

Authors:  R Lange; I Heiber-Langer; C Bonfils; I Fabre; M Negishi; C Balny
Journal:  Biophys J       Date:  1994-01       Impact factor: 4.033

4.  Conformational changes during enzyme catalysis: role of water in the transition state.

Authors:  R B Loftfield; E A Eigner; A Pastuszyn; T N Lövgren; H Jakubowski
Journal:  Proc Natl Acad Sci U S A       Date:  1980-06       Impact factor: 11.205

5.  Proline and glycine betaine influence protein solvation.

Authors:  L G Paleg; G R Stewart; J W Bradbeer
Journal:  Plant Physiol       Date:  1984-08       Impact factor: 8.340

6.  Role of the 30S ribosomal subunit, initiation factors, and specific ion concentration in barotolerant protein synthesis in Pseudomonas bathycetes.

Authors:  J V Landau; W P Smith; D H Pope
Journal:  J Bacteriol       Date:  1977-04       Impact factor: 3.490

7.  CYP261 enzymes from deep sea bacteria: a clue to conformational heterogeneity in cytochromes P450.

Authors:  Dmitri R Davydov; Elena V Sineva; Nadezhda Y Davydova; Douglas H Bartlett; James R Halpert
Journal:  Biotechnol Appl Biochem       Date:  2013-01-25       Impact factor: 2.431

8.  Cryobaroenzymic studies as a tool for investigating activated complexes: creatine kinase.ADP.Mg.nitrate.creatine as a model.

Authors:  C Balny; F Travers; T Barman; P Douzou
Journal:  Proc Natl Acad Sci U S A       Date:  1985-11       Impact factor: 11.205

9.  Initiation of Bacillus spore germination by hydrostatic pressure: effect of temperature.

Authors:  W G Murrell; P A Wills
Journal:  J Bacteriol       Date:  1977-03       Impact factor: 3.490

10.  Zinc environment and cis peptide bonds in carboxypeptidase A at 1.75-A resolution.

Authors:  D C Rees; M Lewis; R B Honzatko; W N Lipscomb; K D Hardman
Journal:  Proc Natl Acad Sci U S A       Date:  1981-06       Impact factor: 11.205

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