Literature DB >> 10585547

A small and compact genome in the marine cyanobacterium Prochlorococcus marinus CCMP 1375: lack of an intron in the gene for tRNA(Leu)(UAA) and a single copy of the rRNA operon.

B Strehl1, J Holtzendorff, F Partensky, W R Hess.   

Abstract

Data obtained by pulsed field gel electrophoresis revealed for Prochlorococcus marinus CCMP 1375 a genome size of 1.81+/-0.04 Mbp. This value is significantly smaller than for all other cyanobacteria investigated so far. The absence of an intron in the gene for tRNA(Leu)(UAA), which otherwise is widespread among cyanobacteria, and the additional finding that the ribosomal operon exists as a single copy suggest that the deletion of non-essential sequences played a major role in the evolution of P. marinus. A small genome may have been advantageous in the adaptation to very oligotrophic marine conditions.

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Year:  1999        PMID: 10585547     DOI: 10.1111/j.1574-6968.1999.tb08853.x

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  17 in total

1.  Sphingomonas alaskensis strain AFO1, an abundant oligotrophic ultramicrobacterium from the North Pacific.

Authors:  M Eguchi; M Ostrowski; F Fegatella; J Bowman; D Nichols; T Nishino; R Cavicchioli
Journal:  Appl Environ Microbiol       Date:  2001-11       Impact factor: 4.792

2.  Streamlined regulation and gene loss as adaptive mechanisms in Prochlorococcus for optimized nitrogen utilization in oligotrophic environments.

Authors:  Jose Manuel García-Fernández; Nicole Tandeau de Marsac; Jesús Diez
Journal:  Microbiol Mol Biol Rev       Date:  2004-12       Impact factor: 11.056

Review 3.  Ecological genomics of marine picocyanobacteria.

Authors:  D J Scanlan; M Ostrowski; S Mazard; A Dufresne; L Garczarek; W R Hess; A F Post; M Hagemann; I Paulsen; F Partensky
Journal:  Microbiol Mol Biol Rev       Date:  2009-06       Impact factor: 11.056

4.  Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome.

Authors:  Erin J Biers; Shulei Sun; Erinn C Howard
Journal:  Appl Environ Microbiol       Date:  2009-02-06       Impact factor: 4.792

5.  UV hyper-resistance in Prochlorococcus MED4 results from a single base pair deletion just upstream of an operon encoding nudix hydrolase and photolyase.

Authors:  Marcia S Osburne; Brianne M Holmbeck; Jorge Frias-Lopez; Robert Steen; Katherine Huang; Libusha Kelly; Allison Coe; Kristin Waraska; Andrew Gagne; Sallie W Chisholm
Journal:  Environ Microbiol       Date:  2010-03-23       Impact factor: 5.491

6.  Diel expression of cell cycle-related genes in synchronized cultures of Prochlorococcus sp. strain PCC 9511.

Authors:  J Holtzendorff; F Partensky; S Jacquet; F Bruyant; D Marie; L Garczarek; I Mary; D Vaulot; W R Hess
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

7.  In vivo regulation of glutamine synthetase activity in the marine chlorophyll b-containing cyanobacterium Prochlorococcus sp. strain PCC 9511 (oxyphotobacteria).

Authors:  S El Alaoui; J Diez; L Humanes; F Toribio; F Partensky; J M García-Fernández
Journal:  Appl Environ Microbiol       Date:  2001-05       Impact factor: 4.792

8.  Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome.

Authors:  Alexis Dufresne; Marcel Salanoubat; Frédéric Partensky; François Artiguenave; Ilka M Axmann; Valérie Barbe; Simone Duprat; Michael Y Galperin; Eugene V Koonin; Florence Le Gall; Kira S Makarova; Martin Ostrowski; Sophie Oztas; Catherine Robert; Igor B Rogozin; David J Scanlan; Nicole Tandeau de Marsac; Jean Weissenbach; Patrick Wincker; Yuri I Wolf; Wolfgang R Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-13       Impact factor: 11.205

9.  Experimental and computational analysis of transcriptional start sites in the cyanobacterium Prochlorococcus MED4.

Authors:  Jörg Vogel; Ilka M Axmann; Hanspeter Herzel; Wolfgang R Hess
Journal:  Nucleic Acids Res       Date:  2003-06-01       Impact factor: 16.971

10.  Evidence for a major role of antisense RNAs in cyanobacterial gene regulation.

Authors:  Jens Georg; Björn Voss; Ingeborg Scholz; Jan Mitschke; Annegret Wilde; Wolfgang R Hess
Journal:  Mol Syst Biol       Date:  2009-09-15       Impact factor: 11.429

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