Literature DB >> 10571035

Transcriptional regulation of the human type I collagen alpha2 (COL1A2) gene by the combination of two dinucleotide repeats.

J Akai1, A Kimura, R I Hata.   

Abstract

Human type I collagen alpha2 (COL1A2) gene has two dinucleotide repeats: one in the 5'-flanking region of the gene is composed of poly(dC-dA) and poly(dC-dG), while the other in the first intron consists of poly(dG-dT). In this study, we show that transcription of the COL1A2 gene is regulated by these repeats. Luciferase reporter gene assay indicated that the transcriptional activity of the COL1A2 gene was enhanced by the co-presence of both repeats, but not by either repeat alone. Analysis of the polymorphism in the two repeat regions indicated that both sequences have a variation in their repetition number, thus showing that these dinucleotide repeats constitute microsatellites. A study using constructs containing various combinations of the repeat alleles showed differences in their transcriptional activities. The results, however, showed that the stimulation rate of luciferase activity was not linear with the repetitive number of the repeats either in the 5' flanking region or in the first intron of the gene and that the stimulation was provided by the combination of these polymorphic repetitive sequences. These observations indicated that the dinucleotide repeats have an enhancing activity on transcription of the COL1A2 gene and that the variation in the number of repetitions may partly be responsible for the difference in the transcriptional activity of the gene.

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Year:  1999        PMID: 10571035     DOI: 10.1016/s0378-1119(99)00380-7

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  17 in total

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Review 2.  Structural variants in SNCA gene and the implication to synucleinopathies.

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4.  The SSV Evaluation System: A Tool to Prioritize Short Structural Variants for Studies of Possible Regulatory and Causal Variants.

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Review 5.  The effects of the TOMM40 poly-T alleles on Alzheimer's disease phenotypes.

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7.  Gene polymorphisms, bone mineral density and bone mineral content in young children: the Iowa Bone Development Study.

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Review 9.  New Genetic Approaches to AD: Lessons from APOE-TOMM40 Phylogenetics.

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10.  Towards precision medicine in Alzheimer's disease: deciphering genetic data to establish informative biomarkers.

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