Literature DB >> 10570124

Chromatin modification by DNA tracking.

A Travers1.   

Abstract

In general, the transcriptional competence of a chromatin domain is correlated with increased sensitivity to DNase I cleavage. A recent observation that actively transcribing RNA polymerase II piggybacks a histone acetyltranferase activity [Wittschieben, B., Otero, G., de Bizemont, T., Fellows, J., Erdjument-Bromage, H., Ohba, R., Li, Y., Allis, C. D., Tempst, P. & Svejstrup, J. Q. (1999) Mol. Cell 4, 123-128] implies that the state of histone acetylation, and hence the ability of chromatin to fold, can be altered by a processive mechanism. In this article, it is proposed that tracking-mediated chromatin modification could create and/or maintain an open configuration in a complete chromatin domain including both intra- and extragenic regions. This mechanism suggests a putative functional role for the extragenic transcription observed at the beta-globin and other loci in vertebrate cells.

Mesh:

Substances:

Year:  1999        PMID: 10570124      PMCID: PMC24116          DOI: 10.1073/pnas.96.24.13634

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  Transcription of the hypersensitive site HS2 enhancer in erythroid cells.

Authors:  D Tuan; S Kong; K Hu
Journal:  Proc Natl Acad Sci U S A       Date:  1992-12-01       Impact factor: 11.205

Review 2.  Chromatin unfolds.

Authors:  G Felsenfeld
Journal:  Cell       Date:  1996-07-12       Impact factor: 41.582

3.  Functional association between promoter structure and transcript alternative splicing.

Authors:  P Cramer; C G Pesce; F E Baralle; A R Kornblihtt
Journal:  Proc Natl Acad Sci U S A       Date:  1997-10-14       Impact factor: 11.205

Review 4.  Special HATs for special occasions: linking histone acetylation to chromatin assembly and gene activation.

Authors:  J E Brownell; C D Allis
Journal:  Curr Opin Genet Dev       Date:  1996-04       Impact factor: 5.578

5.  Transcription of the HS2 enhancer toward a cis-linked gene is independent of the orientation, position, and distance of the enhancer relative to the gene.

Authors:  S Kong; D Bohl; C Li; D Tuan
Journal:  Mol Cell Biol       Date:  1997-07       Impact factor: 4.272

6.  The C-terminal domain of RNA polymerase II couples mRNA processing to transcription.

Authors:  S McCracken; N Fong; K Yankulov; S Ballantyne; G Pan; J Greenblatt; S D Patterson; M Wickens; D L Bentley
Journal:  Nature       Date:  1997-01-23       Impact factor: 49.962

Review 7.  Histone acetylation in chromatin structure and transcription.

Authors:  M Grunstein
Journal:  Nature       Date:  1997-09-25       Impact factor: 49.962

8.  A novel histone acetyltransferase is an integral subunit of elongating RNA polymerase II holoenzyme.

Authors:  B O Wittschieben; G Otero; T de Bizemont; J Fellows; H Erdjument-Bromage; R Ohba; Y Li; C D Allis; P Tempst; J Q Svejstrup
Journal:  Mol Cell       Date:  1999-07       Impact factor: 17.970

9.  Core histone hyperacetylation co-maps with generalized DNase I sensitivity in the chicken beta-globin chromosomal domain.

Authors:  T R Hebbes; A L Clayton; A W Thorne; C Crane-Robinson
Journal:  EMBO J       Date:  1994-04-15       Impact factor: 11.598

10.  Definition of the minimal requirements within the human beta-globin gene and the dominant control region for high level expression.

Authors:  P Collis; M Antoniou; F Grosveld
Journal:  EMBO J       Date:  1990-01       Impact factor: 11.598

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  30 in total

1.  Chromatin remodeling by RSC involves ATP-dependent DNA translocation.

Authors:  Anjanabha Saha; Jacqueline Wittmeyer; Bradley R Cairns
Journal:  Genes Dev       Date:  2002-08-15       Impact factor: 11.361

2.  A human globin enhancer causes both discrete and widespread alterations in chromatin structure.

Authors:  AeRi Kim; Ann Dean
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

Review 3.  Multiple links between transcription and splicing.

Authors:  Alberto R Kornblihtt; Manuel de la Mata; Juan Pablo Fededa; Manuel J Munoz; Guadalupe Nogues
Journal:  RNA       Date:  2004-10       Impact factor: 4.942

4.  Mapping of the boundary of the erythroid-specific transcriptional unit in the 5'-terminal region of the domain of chicken alpha-globin genes.

Authors:  V V Borunova; E S Yudinkova; S V Razin
Journal:  Dokl Biochem Biophys       Date:  2003 Nov-Dec       Impact factor: 0.788

Review 5.  Architectural and Functional Commonalities between Enhancers and Promoters.

Authors:  Tae-Kyung Kim; Ramin Shiekhattar
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

6.  Regulation of T cell receptor alpha gene assembly by a complex hierarchy of germline Jalpha promoters.

Authors:  Abbas Hawwari; Cheryl Bock; Michael S Krangel
Journal:  Nat Immunol       Date:  2005-04-03       Impact factor: 25.606

Review 7.  Transcription through chromatin by RNA polymerase II: histone displacement and exchange.

Authors:  Olga I Kulaeva; Daria A Gaykalova; Vasily M Studitsky
Journal:  Mutat Res       Date:  2007-01-21       Impact factor: 2.433

8.  Gene and genon concept: coding versus regulation. A conceptual and information-theoretic analysis of genetic storage and expression in the light of modern molecular biology.

Authors:  Klaus Scherrer; Jürgen Jost
Journal:  Theory Biosci       Date:  2007-09-22       Impact factor: 1.919

9.  Highly restricted localization of RNA polymerase II within a locus control region of a tissue-specific chromatin domain.

Authors:  Kirby D Johnson; Jeffrey A Grass; Changwon Park; Hogune Im; Kyunghee Choi; Emery H Bresnick
Journal:  Mol Cell Biol       Date:  2003-09       Impact factor: 4.272

10.  Quantification of DNaseI-sensitivity by real-time PCR: quantitative analysis of DNaseI-hypersensitivity of the mouse beta-globin LCR.

Authors:  M McArthur; S Gerum; G Stamatoyannopoulos
Journal:  J Mol Biol       Date:  2001-10-12       Impact factor: 5.469

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