Literature DB >> 10526350

CASP3 comparative modeling evaluation.

T Alwyn Jones1, G J Kleywegt.   

Abstract

We report our evaluation of the CASP3 comparative modelling competition. Our analysis covers the accuracy of the over-all fold, the bridging of insertions and deletions, and the adding of side-chains. We describe our attempts at automating aspects of the evaluation.

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Year:  1999        PMID： 10526350     DOI： 10.1002/(sici)1097-0134(1999)37:3+<30::aid-prot6>3.0.co;2-s

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


  12 in total

1.  Modeling of loops in protein structures.

Authors:  A Fiser; R K Do; A Sali
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

2.  Improving the quality of twilight-zone alignments.

Authors:  L Jaroszewski; L Rychlewski; A Godzik
Journal:  Protein Sci       Date:  2000-08       Impact factor: 6.725

3.  In search for more accurate alignments in the twilight zone.

Authors:  Lukasz Jaroszewski; Weizhong Li; Adam Godzik
Journal:  Protein Sci       Date:  2002-07       Impact factor: 6.725

4.  Docking of protein models.

Authors:  Andrei Tovchigrechko; Christopher A Wells; Ilya A Vakser
Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

Review 5.  Structure-based discovery of antibacterial drugs.

Authors:  Katie J Simmons; Ian Chopra; Colin W G Fishwick
Journal:  Nat Rev Microbiol       Date:  2010-07       Impact factor: 60.633

6.  Assessment of template-based modeling of protein structure in CASP11.

Authors:  Vivek Modi; Qifang Xu; Sam Adhikari; Roland L Dunbrack
Journal:  Proteins       Date:  2016-06-15

7.  CODA: a combined algorithm for predicting the structurally variable regions of protein models.

Authors:  C M Deane; T L Blundell
Journal:  Protein Sci       Date:  2001-03       Impact factor: 6.725

8.  Collective dynamics differentiates functional divergence in protein evolution.

Authors:  Tyler J Glembo; Daniel W Farrell; Z Nevin Gerek; M F Thorpe; S Banu Ozkan
Journal:  PLoS Comput Biol       Date:  2012-03-29       Impact factor: 4.475

9.  Rapid detection of similarity in protein structure and function through contact metric distances.

Authors:  Andreas Martin Lisewski; Olivier Lichtarge
Journal:  Nucleic Acids Res       Date:  2006-11-27       Impact factor: 16.971

10.  A comprehensive analysis of 40 blind protein structure predictions.

Authors:  Ram Samudrala; Michael Levitt
Journal:  BMC Struct Biol       Date:  2002-08-01
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