Literature DB >> 20551974

Structure-based discovery of antibacterial drugs.

Katie J Simmons1, Ian Chopra, Colin W G Fishwick.   

Abstract

The modern era of antibacterial chemotherapy began in the 1930s, and the next four decades saw the discovery of almost all the major classes of antibacterial agents that are currently in use. However, bacterial resistance to many of these drugs is becoming an increasing problem. As such, the discovery of drugs with novel modes of action will be vital to meet the threats created by the emergence of resistance. Success in discovering inhibitors using high-throughput screening of chemical libraries is rare. In this Review we explore the exciting opportunities for antibacterial-drug discovery arising from structure-based drug design.

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Year:  2010        PMID: 20551974     DOI: 10.1038/nrmicro2349

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  76 in total

Review 1.  Automated protein structure homology modeling: a progress report.

Authors:  Jurgen Kopp; Torsten Schwede
Journal:  Pharmacogenomics       Date:  2004-06       Impact factor: 2.533

2.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Authors:  Konstantin Arnold; Lorenza Bordoli; Jürgen Kopp; Torsten Schwede
Journal:  Bioinformatics       Date:  2005-11-13       Impact factor: 6.937

Review 3.  Bad bugs need drugs: an update on the development pipeline from the Antimicrobial Availability Task Force of the Infectious Diseases Society of America.

Authors:  George H Talbot; John Bradley; John E Edwards; David Gilbert; Michael Scheld; John G Bartlett
Journal:  Clin Infect Dis       Date:  2005-01-25       Impact factor: 9.079

Review 4.  Structure-based drug design meets the ribosome.

Authors:  François Franceschi; Erin M Duffy
Journal:  Biochem Pharmacol       Date:  2006-01-26       Impact factor: 5.858

5.  Treatment of health-care-associated infections caused by Gram-negative bacteria: a consensus statement.

Authors:  Ian Chopra; Christopher Schofield; Martin Everett; Alex O'Neill; Keith Miller; Mark Wilcox; Jean-Marie Frère; Mike Dawson; Lloyd Czaplewski; Uros Urleb; Patrice Courvalin
Journal:  Lancet Infect Dis       Date:  2008-02       Impact factor: 25.071

6.  Identifying and characterizing binding sites and assessing druggability.

Authors:  Thomas A Halgren
Journal:  J Chem Inf Model       Date:  2009-02       Impact factor: 4.956

7.  Screening a peptidyl database for potential ligands to proteins with side-chain flexibility.

Authors:  V Schnecke; C A Swanson; E D Getzoff; J A Tainer; L A Kuhn
Journal:  Proteins       Date:  1998-10-01

8.  SPROUT: recent developments in the de novo design of molecules.

Authors:  V J Gillet; W Newell; P Mata; G Myatt; S Sike; Z Zsoldos; A P Johnson
Journal:  J Chem Inf Comput Sci       Date:  1994 Jan-Feb

9.  Ensemble modeling of substrate binding to cytochromes P450: analysis of catalytic differences between CYP1A orthologs.

Authors:  Jahnavi C Prasad; Jared V Goldstone; Carlos J Camacho; Sandor Vajda; John J Stegeman
Journal:  Biochemistry       Date:  2007-02-15       Impact factor: 3.162

10.  Inhibitors of bacterial tyrosyl tRNA synthetase: synthesis of four stereoisomeric analogues of the natural product SB-219383.

Authors:  J M Berge; R C Copley; D S Eggleston; D W Hamprecht; R L Jarvest; L M Mensah; P J O'Hanlon; A J Pope
Journal:  Bioorg Med Chem Lett       Date:  2000-08-21       Impact factor: 2.823

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  25 in total

Review 1.  Computational methods in drug discovery.

Authors:  Gregory Sliwoski; Sandeepkumar Kothiwale; Jens Meiler; Edward W Lowe
Journal:  Pharmacol Rev       Date:  2013-12-31       Impact factor: 25.468

Review 2.  Challenges of antibacterial discovery.

Authors:  Lynn L Silver
Journal:  Clin Microbiol Rev       Date:  2011-01       Impact factor: 26.132

3.  Mechanism of MenE inhibition by acyl-adenylate analogues and discovery of novel antibacterial agents.

Authors:  Joe S Matarlo; Christopher E Evans; Indrajeet Sharma; Lubens J Lavaud; Stephen C Ngo; Roger Shek; Kanagalaghatta R Rajashankar; Jarrod B French; Derek S Tan; Peter J Tonge
Journal:  Biochemistry       Date:  2015-10-15       Impact factor: 3.162

Review 4.  In Silico Discovery of Novel Ligands for Antimicrobial Lipopeptides for Computer-Aided Drug Design.

Authors:  Satya Eswari Jujjavarapu; Swasti Dhagat
Journal:  Probiotics Antimicrob Proteins       Date:  2018-06       Impact factor: 4.609

5.  New fluorescence-based high-throughput screening assay for small molecule inhibitors of tyrosyl-DNA phosphodiesterase 2 (TDP2).

Authors:  Carlos J A Ribeiro; Jayakanth Kankanala; Ke Shi; Kayo Kurahashi; Evgeny Kiselev; Azhar Ravji; Yves Pommier; Hideki Aihara; Zhengqiang Wang
Journal:  Eur J Pharm Sci       Date:  2018-03-21       Impact factor: 4.384

6.  Stable analogues of OSB-AMP: potent inhibitors of MenE, the o-succinylbenzoate-CoA synthetase from bacterial menaquinone biosynthesis.

Authors:  Xuequan Lu; Rong Zhou; Indrajeet Sharma; Xiaokai Li; Gyanendra Kumar; Subramanyam Swaminathan; Peter J Tonge; Derek S Tan
Journal:  Chembiochem       Date:  2011-11-23       Impact factor: 3.164

7.  Identification of an Indazole-Based Pharmacophore for the Inhibition of FGFR Kinases Using Fragment-Led de Novo Design.

Authors:  Lewis D Turner; Abbey J Summers; Laura O Johnson; Margaret A Knowles; Colin W G Fishwick
Journal:  ACS Med Chem Lett       Date:  2017-11-11       Impact factor: 4.345

8.  The phosphatidyl-myo-inositol mannosyltransferase PimA is essential for Mycobacterium tuberculosis growth in vitro and in vivo.

Authors:  Francesca Boldrin; Marcello Ventura; Giulia Degiacomi; Sudha Ravishankar; Claudia Sala; Zuzana Svetlikova; Anisha Ambady; Neeraj Dhar; Jana Kordulakova; Ming Zhang; Agnese Serafini; K G Vishwas; V G Vishwas; Gaëlle S Kolly; Naveen Kumar; Giorgio Palù; Marcelo E Guerin; Katarina Mikusova; Stewart T Cole; Riccardo Manganelli
Journal:  J Bacteriol       Date:  2014-07-21       Impact factor: 3.490

9.  Inhibition of Yersinia pestis DNA adenine methyltransferase in vitro by a stibonic acid compound: identification of a potential novel class of antimicrobial agents.

Authors:  J C McKelvie; M I Richards; J E Harmer; T S Milne; P L Roach; P C F Oyston
Journal:  Br J Pharmacol       Date:  2013-01       Impact factor: 8.739

10.  Discovery of potent and selective BRD4 inhibitors capable of blocking TLR3-induced acute airway inflammation.

Authors:  Zhiqing Liu; Bing Tian; Haiying Chen; Pingyuan Wang; Allan R Brasier; Jia Zhou
Journal:  Eur J Med Chem       Date:  2018-04-03       Impact factor: 6.514

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