Literature DB >> 10521334

Biosequence exegesis.

M S Boguski1.   

Abstract

Annotation of large-scale gene sequence data will benefit from comprehensive and consistent application of well-documented, standard analysis methods and from progressive and vigilant efforts to ensure quality and utility and to keep the annotation up to date. However, it is imperative to learn how to apply information derived from functional genomics and proteomics technologies to conceptualize and explain the behaviors of biological systems. Quantitative and dynamical models of systems behaviors will supersede the limited and static forms of single-gene annotation that are now the norm. Molecular biological epistemology will increasingly encompass both teleological and causal explanations.

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Year:  1999        PMID: 10521334     DOI: 10.1126/science.286.5439.453

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  10 in total

1.  A new set of Arabidopsis expressed sequence tags from developing seeds. The metabolic pathway from carbohydrates to seed oil.

Authors:  J A White; J Todd; T Newman; N Focks; T Girke; O M de Ilárduya; J G Jaworski; J B Ohlrogge; C Benning
Journal:  Plant Physiol       Date:  2000-12       Impact factor: 8.340

2.  In silico cloning of novel endothelial-specific genes.

Authors:  L Huminiecki; R Bicknell
Journal:  Genome Res       Date:  2000-11       Impact factor: 9.043

Review 3.  Genome informatics: current status and future prospects.

Authors:  Raimond L Winslow; Mark S Boguski
Journal:  Circ Res       Date:  2003-05-16       Impact factor: 17.367

4.  Bioinformatics and the developing world.

Authors:  Sándor Pongor; David Landsman
Journal:  Biotechnol Dev Monit       Date:  1999-12

5.  Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays.

Authors:  Brian Tjaden; Rini Mukherjee Saxena; Sergey Stolyar; David R Haynor; Eugene Kolker; Carsten Rosenow
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

Review 6.  Data standards for Omics data: the basis of data sharing and reuse.

Authors:  Stephen A Chervitz; Eric W Deutsch; Dawn Field; Helen Parkinson; John Quackenbush; Phillipe Rocca-Serra; Susanna-Assunta Sansone; Christian J Stoeckert; Chris F Taylor; Ronald Taylor; Catherine A Ball
Journal:  Methods Mol Biol       Date:  2011

7.  VIRGO: computational prediction of gene functions.

Authors:  Naveed Massjouni; Corban G Rivera; T M Murali
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

8.  A draft annotation and overview of the human genome.

Authors:  F A Wright; W J Lemon; W D Zhao; R Sears; D Zhuo; J P Wang; H Y Yang; T Baer; D Stredney; J Spitzner; A Stutz; R Krahe; B Yuan
Journal:  Genome Biol       Date:  2001-07-04       Impact factor: 13.583

9.  Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs).

Authors:  D A Natale; U T Shankavaram; M Y Galperin; Y I Wolf; L Aravind; E V Koonin
Journal:  Genome Biol       Date:  2000-11-06       Impact factor: 13.583

10.  SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages.

Authors:  Laurent Bianchetti; Yan Wu; Eric Guerin; Frédéric Plewniak; Olivier Poch
Journal:  Nucleic Acids Res       Date:  2007-09-20       Impact factor: 16.971

  10 in total

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