Literature DB >> 10518516

Crystal structure of the DNA nucleotide excision repair enzyme UvrB from Thermus thermophilus.

M Machius1, L Henry, M Palnitkar, J Deisenhofer.   

Abstract

Nucleotide excision repair (NER) is the most important DNA-repair mechanism in living organisms. In prokaryotes, three enzymes forming the UvrABC system initiate NER of a variety of structurally different DNA lesions. UvrB, the central component of this system, is responsible for the ultimate DNA damage recognition and participates in the incision of the damaged DNA strand. The crystal structure of Thermus thermophilus UvrB reveals a core that is structurally similar to core regions found in helicases, where they constitute molecular motors. Additional domains implicated in binding to DNA and various components of the NER system are attached to this central core. The architecture and distribution of DNA binding sites suggest a possible model for the DNA damage recognition process.

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Year:  1999        PMID: 10518516      PMCID: PMC18352          DOI: 10.1073/pnas.96.21.11717

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  50 in total

1.  The limited strand-separating activity of the UvrAB protein complex and its role in the recognition of DNA damage.

Authors:  I Gordienko; W D Rupp
Journal:  EMBO J       Date:  1997-02-17       Impact factor: 11.598

2.  The binding of UvrAB proteins to bubble and loop regions in duplex DNA.

Authors:  B Ahn; L Grossman
Journal:  J Biol Chem       Date:  1996-08-30       Impact factor: 5.157

3.  Structure of the hepatitis C virus RNA helicase domain.

Authors:  N Yao; T Hesson; M Cable; Z Hong; A D Kwong; H V Le; P C Weber
Journal:  Nat Struct Biol       Date:  1997-06

4.  Formation of DNA repair intermediates and incision by the ATP-dependent UvrB-UvrC endonuclease.

Authors:  Y Zou; R Walker; H Bassett; N E Geacintov; B Van Houten
Journal:  J Biol Chem       Date:  1997-02-21       Impact factor: 5.157

5.  UvrAB activity at a damaged DNA site: is unpaired DNA present?

Authors:  I Gordienko; W D Rupp
Journal:  EMBO J       Date:  1997-02-17       Impact factor: 11.598

6.  Domain structure of Thermus thermophilus UvrB protein. Similarity in domain structure to a helicase.

Authors:  N Nakagawa; R Masui; R Kato; S Kuramitsu
Journal:  J Biol Chem       Date:  1997-09-05       Impact factor: 5.157

7.  Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP.

Authors:  S Korolev; J Hsieh; G H Gauss; T M Lohman; G Waksman
Journal:  Cell       Date:  1997-08-22       Impact factor: 41.582

8.  Sequence-dependent modulation of nucleotide excision repair: the efficiency of the incision reaction is inversely correlated with the stability of the pre-incision UvrB-DNA complex.

Authors:  E Delagoutte; E Bertrand-Burggraf; J Dunand; R P Fuchs
Journal:  J Mol Biol       Date:  1997-03-07       Impact factor: 5.469

Review 9.  Mechanisms of helicase-catalyzed DNA unwinding.

Authors:  T M Lohman; K P Bjornson
Journal:  Annu Rev Biochem       Date:  1996       Impact factor: 23.643

Review 10.  Relationships between DNA repair and transcription.

Authors:  E C Friedberg
Journal:  Annu Rev Biochem       Date:  1996       Impact factor: 23.643

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  35 in total

1.  Architecture of nucleotide excision repair complexes: DNA is wrapped by UvrB before and after damage recognition.

Authors:  E E Verhoeven; C Wyman; G F Moolenaar; J H Hoeijmakers; N Goosen
Journal:  EMBO J       Date:  2001-02-01       Impact factor: 11.598

2.  Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase.

Authors:  J M Caruthers; E R Johnson; D B McKay
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-21       Impact factor: 11.205

3.  Clue to damage recognition by UvrB: residues in the beta-hairpin structure prevent binding to non-damaged DNA.

Authors:  G F Moolenaar; L Höglund; N Goosen
Journal:  EMBO J       Date:  2001-11-01       Impact factor: 11.598

4.  Solution structure of a DNA duplex with a chiral alkyl phosphonate moiety.

Authors:  R Soliva; V Monaco; I Gómez-Pinto; N J Meeuwenoord; G A Marel; J H Boom; C González; M Orozco
Journal:  Nucleic Acids Res       Date:  2001-07-15       Impact factor: 16.971

Review 5.  Modularity and specialization in superfamily 1 and 2 helicases.

Authors:  Martin R Singleton; Dale B Wigley
Journal:  J Bacteriol       Date:  2002-04       Impact factor: 3.490

6.  Crystal structure of reverse gyrase: insights into the positive supercoiling of DNA.

Authors:  A Chapin Rodríguez; Daniela Stock
Journal:  EMBO J       Date:  2002-02-01       Impact factor: 11.598

7.  The presence of two UvrB subunits in the UvrAB complex ensures damage detection in both DNA strands.

Authors:  Esther E A Verhoeven; Claire Wyman; Geri F Moolenaar; Nora Goosen
Journal:  EMBO J       Date:  2002-08-01       Impact factor: 11.598

8.  Interactions between UvrA and UvrB: the role of UvrB's domain 2 in nucleotide excision repair.

Authors:  James J Truglio; Deborah L Croteau; Milan Skorvaga; Matthew J DellaVecchia; Karsten Theis; Bhaskar S Mandavilli; Bennett Van Houten; Caroline Kisker
Journal:  EMBO J       Date:  2004-06-10       Impact factor: 11.598

9.  Reverse gyrase has heat-protective DNA chaperone activity independent of supercoiling.

Authors:  Martin Kampmann; Daniela Stock
Journal:  Nucleic Acids Res       Date:  2004-07-06       Impact factor: 16.971

Review 10.  Prokaryotic nucleotide excision repair.

Authors:  Caroline Kisker; Jochen Kuper; Bennett Van Houten
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-03-01       Impact factor: 10.005

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