Literature DB >> 10512843

Properties of spin and fluorescent labels at a receptor-ligand interface.

R Owenius1, M Osterlund, M Lindgren, M Svensson, O H Olsen, E Persson, P O Freskgård, U Carlsson.   

Abstract

Site-directed labeling was used to obtain local information on the binding interface in a receptor-ligand complex. As a model we have chosen the specific association of the extracellular part of tissue factor (sTF) and factor VIIa (FVIIa), the primary initiator of the blood coagulation cascade. Different spectroscopic labels were covalently attached to an engineered cysteine in position 140 in sTF, a position normally occupied by a Phe residue previously characterized as an important contributor to the sTF:FVIIa interaction. Two spin labels, IPSL [N-(1-oxyl-2,2,5, 5-tetramethyl-3-pyrrolidinyl)iodoacetamide] and MTSSL [(1-oxyl-2,2,5, 5-tetramethylpyrroline-3-methyl)methanethiosulfonate], and two fluorescent labels, IAEDANS [5-((((2-iodoacetyl)amino) ethyl)amino)naphthalene-1-sulfonic acid] and BADAN [6-bromoacetyl-2-dimethylaminonaphthalene], were used. Spectral data from electron paramagnetic resonance (EPR) and fluorescence spectroscopy showed a substantial change in the local environment of all labels when the sTF:FVIIa complex was formed. However, the interaction was probed differently by each label and these differences in spectral appearance could be attributed to differences in label properties such as size, polarity, and/or flexibility. Accordingly, molecular modeling data suggest that the most favorable orientations are unique for each label. Furthermore, line-shape simulations of EPR spectra and calculations based on fluorescence depolarization measurements provided additional details of the local environment of the labels, thereby confirming a tight protein-protein interaction between FVIIa and sTF when the complex is formed. The tightness of this local interaction is similar to that seen in the interior of globular proteins.

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Year:  1999        PMID: 10512843      PMCID: PMC1300504          DOI: 10.1016/S0006-3495(99)77064-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

1.  The crystal structure of the extracellular domain of human tissue factor refined to 1.7 A resolution.

Authors:  Y A Muller; M H Ultsch; A M de Vos
Journal:  J Mol Biol       Date:  1996-02-16       Impact factor: 5.469

2.  The crystal structure of the complex of blood coagulation factor VIIa with soluble tissue factor.

Authors:  D W Banner; A D'Arcy; C Chène; F K Winkler; A Guha; W H Konigsberg; Y Nemerson; D Kirchhofer
Journal:  Nature       Date:  1996-03-07       Impact factor: 49.962

3.  Mapping the folding intermediate of human carbonic anhydrase II. Probing substructure by chemical reactivity and spin and fluorescence labeling of engineered cysteine residues.

Authors:  M Svensson; P Jonasson; P O Freskgård; B H Jonsson; M Lindgren; L G Mårtensson; M Gentile; K Borén; U Carlsson
Journal:  Biochemistry       Date:  1995-07-11       Impact factor: 3.162

4.  Energetic contributions and topographical organization of ligand binding residues of tissue factor.

Authors:  W Ruf; C R Kelly; J R Schullek; D M Martin; I Polikarpov; C W Boys; E G Tuddenham; T S Edgington
Journal:  Biochemistry       Date:  1995-05-16       Impact factor: 3.162

5.  Structural changes in factor VIIa induced by Ca2+ and tissue factor studied using circular dichroism spectroscopy.

Authors:  P O Freskgård; O H Olsen; E Persson
Journal:  Protein Sci       Date:  1996-08       Impact factor: 6.725

6.  Structure of the extracellular domain of human tissue factor: location of the factor VIIa binding site.

Authors:  Y A Muller; M H Ultsch; R F Kelley; A M de Vos
Journal:  Biochemistry       Date:  1994-09-13       Impact factor: 3.162

7.  Characterization of a folding intermediate of human carbonic anhydrase II: probing local mobility by electron paramagnetic resonance.

Authors:  M Lindgren; M Svensson; P O Freskgård; U Carlsson; P Jonasson; L G Mårtensson; B H Jonsson
Journal:  Biophys J       Date:  1995-07       Impact factor: 4.033

8.  Analysis of the factor VIIa binding site on human tissue factor: effects of tissue factor mutations on the kinetics and thermodynamics of binding.

Authors:  R F Kelley; K E Costas; M P O'Connell; R A Lazarus
Journal:  Biochemistry       Date:  1995-08-22       Impact factor: 3.162

9.  Recombinant soluble human tissue factor secreted by Saccharomyces cerevisiae and refolded from Escherichia coli inclusion bodies: glycosylation of mutants, activity and physical characterization.

Authors:  M J Stone; W Ruf; D J Miles; T S Edgington; P E Wright
Journal:  Biochem J       Date:  1995-09-01       Impact factor: 3.857

10.  Crystal structure of the extracellular region of human tissue factor.

Authors:  K Harlos; D M Martin; D P O'Brien; E Y Jones; D I Stuart; I Polikarpov; A Miller; E G Tuddenham; C W Boys
Journal:  Nature       Date:  1994-08-25       Impact factor: 49.962

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  15 in total

1.  Flexibility of the alpha-spectrin N-terminus by EPR and fluorescence polarization.

Authors:  L Cherry; L W Fung; N Menhart
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

2.  Modeling a spin-labeled fusion peptide in a membrane: implications for the interpretation of EPR experiments.

Authors:  Maria Sammalkorpi; Themis Lazaridis
Journal:  Biophys J       Date:  2006-10-13       Impact factor: 4.033

3.  Loop dynamics of the extracellular domain of human tissue factor and activation of factor VIIa.

Authors:  Agnese S Minazzo; Reuben C Darlington; J B Alexander Ross
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

4.  GroEL-induced topological dislocation of a substrate protein β-sheet core: a solution EPR spin-spin distance study.

Authors:  Rikard Owenius; Anngelica Jarl; Bengt-Harald Jonsson; Uno Carlsson; Per Hammarström
Journal:  J Chem Biol       Date:  2010-04-11

5.  Exploring the structure of the 100 amino-acid residue long N-terminus of the plant antenna protein CP29.

Authors:  Maryam Hashemi Shabestari; Cor J A M Wolfs; Ruud B Spruijt; Herbert van Amerongen; Martina Huber
Journal:  Biophys J       Date:  2014-03-18       Impact factor: 4.033

6.  High-resolution probing of local conformational changes in proteins by the use of multiple labeling: unfolding and self-assembly of human carbonic anhydrase II monitored by spin, fluorescent, and chemical reactivity probes.

Authors:  P Hammarström; R Owenius; L G Mårtensson; U Carlsson; M Lindgren
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

7.  Spin and fluorescent probing of the binding interface between tissue factor and factor VIIa at multiple sites.

Authors:  R Owenius; M Osterlund; M Svensson; M Lindgren; E Persson; P O Freskgård; U Carlsson
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

8.  Role of the Met3534-Ala4271 region of the ryanodine receptor in the regulation of Ca2+ release induced by calmodulin binding domain peptide.

Authors:  Jaya Pal Gangopadhyay; Noriaki Ikemoto
Journal:  Biophys J       Date:  2005-12-30       Impact factor: 4.033

9.  Reverse micelles as a tool for probing solvent modulation of protein dynamics: Reverse micelle encapsulated hemoglobin.

Authors:  Camille J Roche; David Dantsker; Elizabeth R Heller; Joseph E Sabat; Joel M Friedman
Journal:  Chem Phys       Date:  2013-08-30       Impact factor: 2.348

10.  Detecting and Characterizing the Kinetic Activation of Thermal Networks in Proteins: Thermal Transfer from a Distal, Solvent-Exposed Loop to the Active Site in Soybean Lipoxygenase.

Authors:  Jan Paulo T Zaragoza; Andy Nguy; Natalie Minnetian; Zhenyu Deng; Anthony T Iavarone; Adam R Offenbacher; Judith P Klinman
Journal:  J Phys Chem B       Date:  2019-10-03       Impact factor: 2.991

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