Literature DB >> 10508675

Evolution of protein function, from a structural perspective.

A E Todd1, C A Orengo, J M Thornton.   

Abstract

The recent growth in structural data, and ensuing analyses, have revealed the structural and functional versatility of protein families. With respect to enzymes, local active-site mutations, variations in surface loops and recruitment of additional domains accommodate the diverse substrate specificities and catalytic activities observed within several superfamilies. Conversely, some functions have more than one structural solution, having evolved independently several times during evolution. Combined with the existence of multi-functional genes, which have arisen by gene recruitment, these phenomena must be considered in the process of genome annotation.

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Year:  1999        PMID: 10508675     DOI: 10.1016/s1367-5931(99)00007-1

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  33 in total

1.  Assigning genomic sequences to CATH.

Authors:  F M Pearl; D Lee; J E Bray; I Sillitoe; A E Todd; A P Harrison; J M Thornton; C A Orengo
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The Hans Neurath Award lecture of The Protein Society: proteins-- a testament to physics, chemistry, and evolution.

Authors:  J M Thornton
Journal:  Protein Sci       Date:  2001-01       Impact factor: 6.725

3.  The CATH extended protein-family database: providing structural annotations for genome sequences.

Authors:  Frances M G Pearl; David Lee; James E Bray; Daniel W A Buchan; Adrian J Shepherd; Christine A Orengo
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

4.  Genetic and structural organization of the aminophenol catabolic operon and its implication for evolutionary process.

Authors:  H S Park; H S Kim
Journal:  J Bacteriol       Date:  2001-09       Impact factor: 3.490

Review 5.  Target selection and determination of function in structural genomics.

Authors:  James D Watson; Annabel E Todd; James Bray; Roman A Laskowski; Aled Edwards; Andrzej Joachimiak; Christine A Orengo; Janet M Thornton
Journal:  IUBMB Life       Date:  2003 Apr-May       Impact factor: 3.885

Review 6.  The role of robustness in phenotypic adaptation and innovation.

Authors:  Andreas Wagner
Journal:  Proc Biol Sci       Date:  2012-01-04       Impact factor: 5.349

7.  A naturally chimeric type IIA topoisomerase in Aquifex aeolicus highlights an evolutionary path for the emergence of functional paralogs.

Authors:  Elsa M Tretter; Jeffrey C Lerman; James M Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-12       Impact factor: 11.205

8.  LC-mass spectrometry analysis of N- and C-terminal boundary sequences of polypeptide fragments by limited proteolysis.

Authors:  Justin G Stroh; Pat Loulakis; Anthony J Lanzetti; Julie Xie
Journal:  J Am Soc Mass Spectrom       Date:  2005-01       Impact factor: 3.109

9.  Protein surface analysis for function annotation in high-throughput structural genomics pipeline.

Authors:  T Andrew Binkowski; Andrzej Joachimiak; Jie Liang
Journal:  Protein Sci       Date:  2005-12       Impact factor: 6.725

10.  Sequence optimization and designability of enzyme active sites.

Authors:  Raj Chakrabarti; Alexander M Klibanov; Richard A Friesner
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-15       Impact factor: 11.205

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