Literature DB >> 10508510

Structural genomics: beyond the human genome project.

S K Burley1, S C Almo, J B Bonanno, M Capel, M R Chance, T Gaasterland, D Lin, A Sali, F W Studier, S Swaminathan.   

Abstract

With access to whole genome sequences for various organisms and imminent completion of the Human Genome Project, the entire process of discovery in molecular and cellular biology is poised to change. Massively parallel measurement strategies promise to revolutionize how we study and ultimately understand the complex biochemical circuitry responsible for controlling normal development, physiologic homeostasis and disease processes. This information explosion is also providing the foundation for an important new initiative in structural biology. We are about to embark on a program of high-throughput X-ray crystallography aimed at developing a comprehensive mechanistic understanding of normal and abnormal human and microbial physiology at the molecular level. We present the rationale for creation of a structural genomics initiative, recount the efforts of ongoing structural genomics pilot studies, and detail the lofty goals, technical challenges and pitfalls facing structural biologists.

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Year:  1999        PMID: 10508510     DOI: 10.1038/13783

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  84 in total

1.  MODBASE, a database of annotated comparative protein structure models.

Authors:  R Sánchez; U Pieper; N Mirković; P I de Bakker; E Wittenstein; A Sali
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm.

Authors:  I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  Automated search of natively folded protein fragments for high-throughput structure determination in structural genomics.

Authors:  Y Kuroda; K Tani; Y Matsuo; S Yokoyama
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

4.  Structure of a genetically engineered molecular motor.

Authors:  W Kliche; S Fujita-Becker; M Kollmar; D J Manstein; F J Kull
Journal:  EMBO J       Date:  2001-01-15       Impact factor: 11.598

5.  An approach for high-throughput structure determination of proteins by NMR spectroscopy.

Authors:  A Medek; E T Olejniczak; R P Meadows; S W Fesik
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

6.  Links from genome proteins to known 3-D structures.

Authors:  Y Wang; S Bryant; R Tatusov; T Tatusova
Journal:  Genome Res       Date:  2000-10       Impact factor: 9.043

Review 7.  Structural genomics: an approach to the protein folding problem.

Authors:  G T Montelione
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

8.  Genes linked by fusion events are generally of the same functional category: a systematic analysis of 30 microbial genomes.

Authors:  I Yanai; A Derti; C DeLisi
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

9.  MODBASE, a database of annotated comparative protein structure models.

Authors:  Ursula Pieper; Narayanan Eswar; Ashley C Stuart; Valentin A Ilyin; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

Review 10.  Structural genomics: a pipeline for providing structures for the biologist.

Authors:  Mark R Chance; Anne R Bresnick; Stephen K Burley; Jian-Sheng Jiang; Christopher D Lima; Andrej Sali; Steven C Almo; Jeffrey B Bonanno; John A Buglino; Simon Boulton; Hua Chen; Narayanan Eswar; Guoshun He; Raymond Huang; Valentin Ilyin; Linda McMahan; Ursula Pieper; Soumya Ray; Marc Vidal; Li Kai Wang
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

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