Literature DB >> 10500186

Ecosystem rooting depth determined with caves and DNA.

R B Jackson1, L A Moore, W A Hoffmann, W T Pockman, C R Linder.   

Abstract

Belowground vertical community composition and maximum rooting depth of the Edwards Plateau of central Texas were determined by using DNA sequence variation to identify roots from caves 5-65 m deep. Roots from caves were identified by comparing their DNA sequences for the internal transcribed spacer (ITS) region of the 18S-26S ribosomal DNA repeat against a reference ITS database developed for woody plants of the region. Sequencing the ITS provides, to our knowledge, the first universal method for identifying plant roots. At least six tree species in the system grew roots deeper than 5 m, but only the evergreen oak, Quercus fusiformis, was found below 10 m. The maximum rooting depth for the ecosystem was approximately 25 m. (18)O isotopic signatures for stem water of Q. fusiformis confirmed water uptake from 18 m underground. The availability of resources at depth, coupled with small surface pools of water and nutrients, may explain the occurrence of deep roots in this and other systems.

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Year:  1999        PMID: 10500186      PMCID: PMC18043          DOI: 10.1073/pnas.96.20.11387

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  8 in total

1.  A global budget for fine root biomass, surface area, and nutrient contents.

Authors:  R B Jackson; H A Mooney; E D Schulze
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-08       Impact factor: 11.205

2.  Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the compositae.

Authors:  B G Baldwin
Journal:  Mol Phylogenet Evol       Date:  1992-03       Impact factor: 4.286

3.  Rapid physiological adjustment of roots to localized soil enrichment.

Authors:  R B Jackson; J H Manwaring; M M Caldwell
Journal:  Nature       Date:  1990-03-01       Impact factor: 49.962

4.  Deformational mass transport and invasive processes in soil evolution.

Authors:  G H Brimhall; O A Chadwick; C J Lewis; W Compston; I S Williams; K J Danti; W E Dietrich; M E Power; D Hendricks; J Bratt
Journal:  Science       Date:  1992-02-07       Impact factor: 47.728

Review 5.  Maximum rooting depth of vegetation types at the global scale.

Authors:  J Canadell; R B Jackson; J B Ehleringer; H A Mooney; O E Sala; E-D Schulze
Journal:  Oecologia       Date:  1996-12       Impact factor: 3.225

Review 6.  A global analysis of root distributions for terrestrial biomes.

Authors:  R B Jackson; J Canadell; J R Ehleringer; H A Mooney; O E Sala; E D Schulze
Journal:  Oecologia       Date:  1996-11       Impact factor: 3.225

7.  Hydraulic lift: consequences of water efflux from the roots of plants.

Authors:  Martyn M Caldwell; Todd E Dawson; James H Richards
Journal:  Oecologia       Date:  1998-01       Impact factor: 3.225

8.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

  8 in total
  26 in total

1.  Root niche partitioning among grasses, saplings, and trees measured using a tracer technique.

Authors:  Andrew Kulmatiski; Karen H Beard
Journal:  Oecologia       Date:  2012-07-03       Impact factor: 3.225

2.  Hydraulic responses to extreme drought conditions in three co-dominant tree species in shallow soil over bedrock.

Authors:  Kelly R Kukowski; Susanne Schwinning; Benjamin F Schwartz
Journal:  Oecologia       Date:  2012-10-02       Impact factor: 3.225

Review 3.  Hydrologic regulation of plant rooting depth.

Authors:  Ying Fan; Gonzalo Miguez-Macho; Esteban G Jobbágy; Robert B Jackson; Carlos Otero-Casal
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-18       Impact factor: 11.205

4.  Reply to Pierret and Lacombe: Global controls on maximum rooting depths remain important.

Authors:  Ying Fan; Gonzalo Miguez-Macho; Esteban G Jobbágy; Robert B Jackson; Carlos Otero-Casal
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-27       Impact factor: 11.205

5.  Use of DNA barcodes to identify flowering plants.

Authors:  W John Kress; Kenneth J Wurdack; Elizabeth A Zimmer; Lee A Weigt; Daniel H Janzen
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-31       Impact factor: 11.205

6.  The effects of groundwater depth on water uptake of Populus euphratica and Tamarix ramosissima in the hyperarid region of Northwestern China.

Authors:  Yapeng Chen; Yaning Chen; Changchun Xu; Weihong Li
Journal:  Environ Sci Pollut Res Int       Date:  2016-05-26       Impact factor: 4.223

7.  Salt leaching leads to drier soils in disturbed semiarid woodlands of central Argentina.

Authors:  Victoria A Marchesini; R J Fernández; E G Jobbágy
Journal:  Oecologia       Date:  2012-09-27       Impact factor: 3.225

8.  Nutrient uptake as a contributing explanation for deep rooting in arid and semi-arid ecosystems.

Authors:  R L McCulley; E G Jobbágy; W T Pockman; R B Jackson
Journal:  Oecologia       Date:  2004-08-19       Impact factor: 3.225

9.  Contrasting hydraulic architecture and function in deep and shallow roots of tree species from a semi-arid habitat.

Authors:  Daniel M Johnson; Craig R Brodersen; Mary Reed; Jean-Christophe Domec; Robert B Jackson
Journal:  Ann Bot       Date:  2013-12-20       Impact factor: 4.357

10.  Hydraulic lift and tolerance to salinity of semiarid species: consequences for species interactions.

Authors:  Cristina Armas; Francisco M Padilla; Francisco I Pugnaire; Robert B Jackson
Journal:  Oecologia       Date:  2010-01       Impact factor: 3.225

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