Literature DB >> 10428790

An iso-random Bi Bi mechanism for adenylate kinase.

X R Sheng1, X Li, X M Pan.   

Abstract

An iso-random Bi Bi mechanism has been proposed for adenylate kinase. In this mechanism, one of the enzyme forms can bind the substrates MgATP and AMP, whereas the other form can bind the products MgADP and ADP. In a catalytic cycle, the conformational changes of the free enzyme and the ternary complexes are the rate-limiting steps. The AP(5)A inhibition equations derived from this mechanism show theoretically that AP(5)A acts as a competitive inhibitor for the forward reaction and a mixed noncompetitive inhibitor for the backward reaction.

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Year:  1999        PMID: 10428790     DOI: 10.1074/jbc.274.32.22238

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  17 in total

1.  Overlap between folding and functional energy landscapes for adenylate kinase conformational change.

Authors:  Ulrika Olsson; Magnus Wolf-Watz
Journal:  Nat Commun       Date:  2010-11-16       Impact factor: 14.919

2.  On the roles of substrate binding and hinge unfolding in conformational changes of adenylate kinase.

Authors:  Jason B Brokaw; Jhih-Wei Chu
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

3.  Reaction dynamics analysis of a reconstituted Escherichia coli protein translation system by computational modeling.

Authors:  Tomoaki Matsuura; Naoki Tanimura; Kazufumi Hosoda; Tetsuya Yomo; Yoshihiro Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-06       Impact factor: 11.205

Review 4.  Conformational heterogeneity within the LID domain mediates substrate binding to Escherichia coli adenylate kinase: function follows fluctuations.

Authors:  Travis P Schrank; James O Wrabl; Vincent J Hilser
Journal:  Top Curr Chem       Date:  2013

5.  Tracking the Catalytic Cycle of Adenylate Kinase by Ultraviolet Photodissociation Mass Spectrometry.

Authors:  M Rachel Mehaffey; Michael B Cammarata; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2017-12-15       Impact factor: 6.986

6.  The crystal structure of Mycobacterium tuberculosis adenylate kinase in complex with two molecules of ADP and Mg2+ supports an associative mechanism for phosphoryl transfer.

Authors:  Marco Bellinzoni; Ahmed Haouz; Martin Graña; Hélène Munier-Lehmann; William Shepard; Pedro M Alzari
Journal:  Protein Sci       Date:  2006-05-02       Impact factor: 6.725

7.  Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism.

Authors:  Karunesh Arora; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-13       Impact factor: 11.205

8.  A modular minimal cell model: purine and pyrimidine transport and metabolism.

Authors:  M Castellanos; D B Wilson; M L Shuler
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-16       Impact factor: 11.205

9.  Structure and biochemical characterization of an adenylate kinase originating from the psychrophilic organism Marinibacillus marinus.

Authors:  Milya Davlieva; Yousif Shamoo
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-07-21

10.  Direct Mg(2+) binding activates adenylate kinase from Escherichia coli.

Authors:  Yan-Wen Tan; Jeffrey A Hanson; Haw Yang
Journal:  J Biol Chem       Date:  2008-11-24       Impact factor: 5.157

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