Literature DB >> 10423455

Studies of the ligand binding reaction of adipocyte lipid binding protein using the fluorescent probe 1, 8-anilinonaphthalene-8-sulfonate.

J J Ory1, L J Banaszak.   

Abstract

The fluorescent probe anilinonaphthalene-8-sulfonate binds to adipocyte lipid binding protein at a site that competes with normal physiological ligands, such as fatty acids. Binding to the protein is accompanied by a relatively large increase in fluorescent intensity. To correlate the major change in optical properties and to determine the mechanism of competitive inhibition with fatty acids, the crystal structure of the protein with the bound fluorophore has been determined. In addition, the thermodynamic contributions to the binding reaction have been studied by titration calorimetry. Because the binding site is in a relatively internal position, kinetic studies have also been carried out to determine k(on). The results indicate that binding is not accompanied by any major conformational change. However, the negatively charged sulfonate moiety is not positioned the same as the carboxylate of fatty acid ligands as determined in previous studies. Nonetheless, the binding reaction is still driven by enthalpic effects. As judged by the crystallographic structure, a significant amount of the surface of the fluorophore is no longer exposed to water in the bound state.

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Year:  1999        PMID: 10423455      PMCID: PMC1300401          DOI: 10.1016/S0006-3495(99)76961-4

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  25 in total

1.  Detection, delineation, measurement and display of cavities in macromolecular structures.

Authors:  G J Kleywegt; T A Jones
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-03-01

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Authors:  D P Cistola; K Kim; H Rogl; C Frieden
Journal:  Biochemistry       Date:  1996-06-11       Impact factor: 3.162

3.  Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design.

Authors:  J Liang; H Edelsbrunner; C Woodward
Journal:  Protein Sci       Date:  1998-09       Impact factor: 6.725

4.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

Review 5.  New PC versions of the kinetic-simulation and fitting programs, KINSIM and FITSIM.

Authors:  Q Dang; C Frieden
Journal:  Trends Biochem Sci       Date:  1997-08       Impact factor: 13.807

6.  Characterization of the sources of protein-ligand affinity: 1-sulfonato-8-(1')anilinonaphthalene binding to intestinal fatty acid binding protein.

Authors:  W R Kirk; E Kurian; F G Prendergast
Journal:  Biophys J       Date:  1996-01       Impact factor: 4.033

7.  Test reactions for a stopped-flow apparatus. Reduction of 2,6-dichlorophenolindophenol and potassium ferricyanide by L-ascorbic acid.

Authors:  B Tonomura; H Nakatani; M Ohnishi; J Yamaguchi-Ito; K Hiromi
Journal:  Anal Biochem       Date:  1978-02       Impact factor: 3.365

8.  Protein crystallization using incomplete factorial experiments.

Authors:  C W Carter; C W Carter
Journal:  J Biol Chem       Date:  1979-12-10       Impact factor: 5.157

9.  Discrete backbone disorder in the nuclear magnetic resonance structure of apo intestinal fatty acid-binding protein: implications for the mechanism of ligand entry.

Authors:  M E Hodsdon; D P Cistola
Journal:  Biochemistry       Date:  1997-02-11       Impact factor: 3.162

10.  Structural characterization of two synthetic catalysts based on adipocyte lipid-binding protein.

Authors:  J J Ory; A Mazhary; H Kuang; R R Davies; M D Distefano; L J Banaszak
Journal:  Protein Eng       Date:  1998-04
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  19 in total

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Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  X-ray crystallographic analysis of adipocyte fatty acid binding protein (aP2) modified with 4-hydroxy-2-nonenal.

Authors:  Kristina Hellberg; Paul A Grimsrud; Andrew C Kruse; Leonard J Banaszak; Douglas H Ohlendorf; David A Bernlohr
Journal:  Protein Sci       Date:  2010-08       Impact factor: 6.725

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4.  Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis.

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Journal:  ACS Med Chem Lett       Date:  2016-02-16       Impact factor: 4.345

5.  Structural basis for activation of fatty acid-binding protein 4.

Authors:  Richard E Gillilan; Stephen D Ayers; Noa Noy
Journal:  J Mol Biol       Date:  2007-08-02       Impact factor: 5.469

6.  Novel Molecular Interactions of Acylcarnitines and Fatty Acids with Myoglobin.

Authors:  Sree V Chintapalli; Srinivas Jayanthi; Prema L Mallipeddi; Ravikumar Gundampati; Thallapuranam Krishnaswamy Suresh Kumar; Damian B van Rossum; Andriy Anishkin; Sean H Adams
Journal:  J Biol Chem       Date:  2016-10-07       Impact factor: 5.157

7.  Characterization of the binding of 8-anilinonaphthalene sulfonate to rat class Mu GST M1-1.

Authors:  Nichole Kinsley; Yasien Sayed; Salerwe Mosebi; Richard N Armstrong; Heini W Dirr
Journal:  Biophys Chem       Date:  2008-08-05       Impact factor: 2.352

8.  Ratiometric mechanosensitive fluorescent dyes: Design and applications.

Authors:  Mark A Haidekker; Emmanuel A Theodorakis
Journal:  J Mater Chem C Mater       Date:  2016-01-14       Impact factor: 7.393

9.  Structural and thermodynamic effects of ANS binding to human interleukin-1 receptor antagonist.

Authors:  Ramil F Latypov; Dingjiang Liu; Kannan Gunasekaran; Timothy S Harvey; Vladimir I Razinkov; Andrei A Raibekas
Journal:  Protein Sci       Date:  2008-02-27       Impact factor: 6.725

10.  Increased hydrophobic surface exposure in the cataract-related G18V variant of human γS-crystallin.

Authors:  Domarin Khago; Eric K Wong; Carolyn N Kingsley; J Alfredo Freites; Douglas J Tobias; Rachel W Martin
Journal:  Biochim Biophys Acta       Date:  2015-10-14
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