Literature DB >> 10423360

High-resolution four-dimensional HMQC-NOESY-HSQC spectroscopy.

R C Morshauser1, E R Zuiderweg.   

Abstract

Practical optimization of the 4D [(1)H, (13)C, (13)C, (1)H] HMQC-NOESY-HSQC experiment in terms of distribution of resolution over the indirect dimensions is analyzed in detail. Recommendations for an optimal experiment are based on computer simulations assessing the effective resolution of the experiment, defined as the percentage of all possible NOE cross peaks that can be assigned unambiguously on the basis of the spectral data alone. Using actual (13)C-(1)H spectra of an 18-kDa chaperone protein, the analysis shows that experiments with the best effective resolution are also among the most sensitive ones. When combined with an efficient aliasing scheme that reduces indirect spectral space 124-fold, a 4D experiment that yields unambiguous assignments for 41% of all possible NOE cross peaks can be recorded in 28 h. A high-resolution experiment, which can be recorded in 8 days, yields 61% unambiguous assignments and can be analyzed more easily using standard NMR display software. The predictions are verified with experimental 4D spectra from which 1850 NOEs (914 long-range) were extracted for the 18-kDa chaperone protein. Copyright 1999 Academic Press.

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Year:  1999        PMID: 10423360     DOI: 10.1006/jmre.1999.1802

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  8 in total

1.  An efficient strategy for assignment of cross-peaks in 3D heteronuclear NOESY experiments.

Authors:  T Diercks; M Coles; H Kessler
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

2.  Covariance NMR in higher dimensions: application to 4D NOESY spectroscopy of proteins.

Authors:  David A Snyder; Fengli Zhang; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2007-09-18       Impact factor: 2.835

3.  Independent valine and leucine isotope labeling in Escherichia coli protein overexpression systems.

Authors:  Roman J Lichtenecker; Katharina Weinhäupl; Lukas Reuther; Julia Schörghuber; Walther Schmid; Robert Konrat
Journal:  J Biomol NMR       Date:  2013-11       Impact factor: 2.835

4.  Structural rearrangement of human lymphotactin, a C chemokine, under physiological solution conditions.

Authors:  E Sonay Kuloğlu; Darrell R McCaslin; John L Markley; Brian F Volkman
Journal:  J Biol Chem       Date:  2002-03-11       Impact factor: 5.157

5.  15N and 13C- SOFAST-HMQC editing enhances 3D-NOESY sensitivity in highly deuterated, selectively [1H,13C]-labeled proteins.

Authors:  Paolo Rossi; Youlin Xia; Nandish Khanra; Gianluigi Veglia; Charalampos G Kalodimos
Journal:  J Biomol NMR       Date:  2016-11-23       Impact factor: 2.835

6.  The disorderly conduct of Hsc70 and its interaction with the Alzheimer's-related Tau protein.

Authors:  Isabelle R Taylor; Atta Ahmad; Taia Wu; Bryce A Nordhues; Anup Bhullar; Jason E Gestwicki; Erik R P Zuiderweg
Journal:  J Biol Chem       Date:  2018-05-15       Impact factor: 5.157

7.  Coupled decomposition of four-dimensional NOESY spectra.

Authors:  Sebastian Hiller; Ilghis Ibraghimov; Gerhard Wagner; Vladislav Y Orekhov
Journal:  J Am Chem Soc       Date:  2009-09-16       Impact factor: 15.419

8.  NOEnet--use of NOE networks for NMR resonance assignment of proteins with known 3D structure.

Authors:  Dirk Stratmann; Carine van Heijenoort; Eric Guittet
Journal:  Bioinformatics       Date:  2008-12-12       Impact factor: 6.937

  8 in total

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