Literature DB >> 10411132

Kinetoplastid RNA editing does not require the terminal 3' hydroxyl of guide RNA, but modifications to the guide RNA terminus can inhibit in vitro U insertion.

M L Burgess1, S Heidmann, K Stuart.   

Abstract

During RNA editing in kinetoplastid parasites, trans-acting guide RNAs (gRNAs) direct the insertion and deletion of U residues at precise sites in mitochondrial pre-mRNAs. We show here that some modifications to the 3' terminal ribose of gRNA inhibit its ability to direct in vitro U insertion. However, we found that gRNAs lacking this moiety in some circumstances support in vitro editing. Thus, the 3' OH is not required. Inhibition resulting from gRNA modification can be overcome by increasing the gRNA-pre-mRNA base-pairing potential upstream of the editing site, suggesting an importance for this interaction to productive processing.

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Year:  1999        PMID: 10411132      PMCID: PMC1369813          DOI: 10.1017/s1355838299990453

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  29 in total

1.  A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information.

Authors:  B Blum; N Bakalara; L Simpson
Journal:  Cell       Date:  1990-01-26       Impact factor: 41.582

2.  Guide RNAs in kinetoplastid mitochondria have a nonencoded 3' oligo(U) tail involved in recognition of the preedited region.

Authors:  B Blum; L Simpson
Journal:  Cell       Date:  1990-07-27       Impact factor: 41.582

3.  Addition of uridines to edited RNAs in trypanosome mitochondria occurs independently of transcription.

Authors:  M E Harris; D R Moore; S L Hajduk
Journal:  J Biol Chem       Date:  1990-07-05       Impact factor: 5.157

4.  Chimeric gRNA-mRNA molecules with oligo(U) tails covalently linked at sites of RNA editing suggest that U addition occurs by transesterification.

Authors:  B Blum; N R Sturm; A M Simpson; L Simpson
Journal:  Cell       Date:  1991-05-17       Impact factor: 41.582

Review 5.  RNA editing: world's smallest introns?

Authors:  T R Cech
Journal:  Cell       Date:  1991-02-22       Impact factor: 41.582

6.  Mapping contacts between gRNA and mRNA in trypanosome RNA editing.

Authors:  S S Leung; D J Koslowsky
Journal:  Nucleic Acids Res       Date:  1999-02-01       Impact factor: 16.971

7.  Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

Authors:  M Zuker; P Stiegler
Journal:  Nucleic Acids Res       Date:  1981-01-10       Impact factor: 16.971

8.  The IsTaR 1 serodeme of Trypanosoma brucei: development of a new serodeme.

Authors:  K Stuart; E Gobright; L Jenni; M Milhausen; L Thomashow; N Agabian
Journal:  J Parasitol       Date:  1984-10       Impact factor: 1.276

9.  Different Trypanosoma brucei guide RNA molecules associate with an identical complement of mitochondrial proteins in vitro.

Authors:  J Köller; G Nörskau; A S Paul; K Stuart; H U Göringer
Journal:  Nucleic Acids Res       Date:  1994-06-11       Impact factor: 16.971

10.  Identification by UV cross-linking of oligo(U)-binding proteins in mitochondria of the insect trypanosomatid Crithidia fasciculata.

Authors:  P Leegwater; D Speijer; R Benne
Journal:  Eur J Biochem       Date:  1995-02-01
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  13 in total

1.  Trypanosome RNA editing: simple guide RNA features enhance U deletion 100-fold.

Authors:  J Cruz-Reyes; A Zhelonkina; L Rusche; B Sollner-Webb
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

2.  Uridylate addition and RNA ligation contribute to the specificity of kinetoplastid insertion RNA editing.

Authors:  R P Igo; S S Palazzo; M L Burgess; A K Panigrahi; K Stuart
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

3.  The specificity of nucleotide removal during RNA editing in Trypanosoma brucei.

Authors:  S D Lawson; R P Igo; R Salavati; K D Stuart
Journal:  RNA       Date:  2001-12       Impact factor: 4.942

4.  RNA sequence and base pairing effects on insertion editing in Trypanosoma brucei.

Authors:  Robert P Igo; Sobomabo D Lawson; Kenneth Stuart
Journal:  Mol Cell Biol       Date:  2002-03       Impact factor: 4.272

5.  Mitochondrial RNAs of myxomycetes terminate with non-encoded 3' poly(U) tails.

Authors:  T L Horton; L F Landweber
Journal:  Nucleic Acids Res       Date:  2000-12-01       Impact factor: 16.971

6.  Two distinct roles for terminal uridylyl transferases in RNA editing.

Authors:  Jonatha M Gott
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-08       Impact factor: 11.205

7.  RNA editing in Trypanosoma brucei: characterization of gRNA U-tail interactions with partially edited mRNA substrates.

Authors:  S S Leung; D J Koslowsky
Journal:  Nucleic Acids Res       Date:  2001-02-01       Impact factor: 16.971

Review 8.  Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates.

Authors:  Julius Lukes; Hassan Hashimi; Alena Zíková
Journal:  Curr Genet       Date:  2005-11-04       Impact factor: 3.886

9.  Interactions of mRNAs and gRNAs involved in trypanosome mitochondrial RNA editing: structure probing of a gRNA bound to its cognate mRNA.

Authors:  Laura E Yu; Donna J Koslowsky
Journal:  RNA       Date:  2006-04-17       Impact factor: 4.942

10.  Sequence bias in edited kinetoplastid RNAs.

Authors:  M L Burgess; K Stuart
Journal:  RNA       Date:  2000-11       Impact factor: 4.942

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