Literature DB >> 10400475

RNA-protein complexes.

S Cusack1.   

Abstract

RNA-binding proteins are an extremely diverse group of proteins, reflecting the diverse functional requirements of cellular RNAs. Whereas the number of structures of RNA-binding proteins or modules is increasing at a reasonable rate, that of protein-RNA complexes increments by only a few each year. The recently determined structure of a complex from the U2 small nuclear ribonucleoprotein particle shows the subtleties of RNA stem-loop recognition by ribonucleoprotein modules. A second structure provides the first direct information on double-stranded RNA recognition by the double-stranded RNA-binding module that occurs in a variety of functionally distinct proteins. Another two new complexes concern proteins interacting with tRNA. The first is methionyl-tRNAf(Met) transformylase, which has to compete with elongation factor Tu for charged initiator tRNAMet and does so by recognising specific features of the acceptor stem of tRNAf(Met). The second is prolyl-tRNA synthetase, complexed with its cognate tRNA, that has to specifically recognise the two guanines common to all tRNA anticodons specific for proline.

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Year:  1999        PMID: 10400475     DOI: 10.1016/s0959-440x(99)80009-8

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  36 in total

1.  StreptoTag: a novel method for the isolation of RNA-binding proteins.

Authors:  M Bachler; R Schroeder; U von Ahsen
Journal:  RNA       Date:  1999-11       Impact factor: 4.942

2.  Conformational analysis of DNA-trinucleotide-hairpin-loop structures using a continuum solvent model.

Authors:  M Zacharias
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

3.  Positive and negative mutant selection in the human histone hairpin-binding protein using the yeast three-hybrid system.

Authors:  F Martin; F Michel; D Zenklusen; B Müller; D Schümperli
Journal:  Nucleic Acids Res       Date:  2000-04-01       Impact factor: 16.971

4.  Structure of Hsp15 reveals a novel RNA-binding motif.

Authors:  B L Staker; P Korber; J C Bardwell; M A Saper
Journal:  EMBO J       Date:  2000-02-15       Impact factor: 11.598

5.  Molecular dynamics simulation of the human U2B" protein complex with U2 snRNA hairpin IV in aqueous solution.

Authors:  J X Guo ; W H Gmeiner
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

6.  Solution structure of the LicT-RNA antitermination complex: CAT clamping RAT.

Authors:  Yinshan Yang; Nathalie Declerck; Xavier Manival; Stéphane Aymerich; Michel Kochoyan
Journal:  EMBO J       Date:  2002-04-15       Impact factor: 11.598

7.  Modelling ion binding to AA platform motifs in RNA: a continuum solvent study including conformational adaptation.

Authors:  C Burkhardt; M Zacharias
Journal:  Nucleic Acids Res       Date:  2001-10-01       Impact factor: 16.971

8.  Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing.

Authors:  Blair R Szymczyna; John Bowman; Susan McCracken; Antonio Pineda-Lucena; Ying Lu; Brian Cox; Mark Lambermon; Brenton R Graveley; Cheryl H Arrowsmith; Benjamin J Blencowe
Journal:  Genes Dev       Date:  2003-02-15       Impact factor: 11.361

9.  A plant virus replication system to assay the formation of RNA pseudotriloop motifs in RNA-protein interactions.

Authors:  P C Joost Haasnoot; John F Bol; René C L Olsthoorn
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-20       Impact factor: 11.205

10.  Quantitation of free energy profiles in RNA-ligand interactions by nucleotide analog interference mapping.

Authors:  Jessee C Cochrane; Robert T Batey; Scott A Strobel
Journal:  RNA       Date:  2003-10       Impact factor: 4.942

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