Literature DB >> 10390617

Nucleotide sequence databases: a gold mine for biologists.

A Pandey1, F Lewitter.   

Abstract

The rapid expansion of nucleotide sequence data available in public databases is revolutionizing biomedical research. These databases have a variety of uses, including the discovery of novel genes, identification of homologous genes, analysis of alternative splicing, chromosomal localization of genes, and detection of polymorphisms. Data sets such as the human transcript map will undoubtedly accelerate identification of candidate genes in positional-cloning approaches. Careful in silico analysis can significantly reduce the amount of lab work required. Approximately half of all human genes are represented in these databases; therefore, one need not wait for the entire human genome to be sequenced before performing genome-wide studies.

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Year:  1999        PMID: 10390617     DOI: 10.1016/s0968-0004(99)01400-0

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  15 in total

1.  Shotgun sequencing of the human transcriptome with ORF expressed sequence tags.

Authors:  E Dias Neto; R G Correa; S Verjovski-Almeida; M R Briones; M A Nagai; W da Silva; M A Zago; S Bordin; F F Costa; G H Goldman; A F Carvalho; A Matsukuma; G S Baia; D H Simpson; A Brunstein; P S de Oliveira; P Bucher; C V Jongeneel; M J O'Hare; F Soares; R R Brentani; L F Reis; S J de Souza; A J Simpson
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

Review 2.  Molecular biologist's guide to proteomics.

Authors:  Paul R Graves; Timothy A J Haystead
Journal:  Microbiol Mol Biol Rev       Date:  2002-03       Impact factor: 11.056

3.  Multiple database coverage of structural biology.

Authors:  Claudia Lascar; Loren D Mendelsohn
Journal:  J Med Libr Assoc       Date:  2002-04

4.  Revisiting the identification of canonical splice isoforms through integration of functional genomics and proteomics evidence.

Authors:  Hong-Dong Li; Rajasree Menon; Gilbert S Omenn; Yuanfang Guan
Journal:  Proteomics       Date:  2014-11-17       Impact factor: 3.984

5.  Improving your four-dimensional image: traveling through a decade of light-sheet-based fluorescence microscopy research.

Authors:  Frederic Strobl; Alexander Schmitz; Ernst H K Stelzer
Journal:  Nat Protoc       Date:  2017-05-04       Impact factor: 13.491

6.  Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes.

Authors:  H Zhu; M Nowrousian; D Kupfer; H V Colot; G Berrocal-Tito; H Lai; D Bell-Pedersen; B A Roe; J J Loros; J C Dunlap
Journal:  Genetics       Date:  2001-03       Impact factor: 4.562

7.  Analysis of receptor signaling pathways by mass spectrometry: identification of vav-2 as a substrate of the epidermal and platelet-derived growth factor receptors.

Authors:  A Pandey; A V Podtelejnikov; B Blagoev; X R Bustelo; M Mann; H F Lodish
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

8.  Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry.

Authors:  Dhanashree S Kelkar; Dhirendra Kumar; Praveen Kumar; Lavanya Balakrishnan; Babylakshmi Muthusamy; Amit Kumar Yadav; Priyanka Shrivastava; Arivusudar Marimuthu; Sridhar Anand; Hema Sundaram; Reena Kingsbury; H C Harsha; Bipin Nair; T S Keshava Prasad; Devendra Singh Chauhan; Kiran Katoch; Vishwa Mohan Katoch; Prahlad Kumar; Raghothama Chaerkady; Srinivasan Ramachandran; Debasis Dash; Akhilesh Pandey
Journal:  Mol Cell Proteomics       Date:  2011-10-03       Impact factor: 5.911

9.  A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry.

Authors:  Raghothama Chaerkady; Dhanashree S Kelkar; Babylakshmi Muthusamy; Kumaran Kandasamy; Sutopa B Dwivedi; Nandini A Sahasrabuddhe; Min-Sik Kim; Santosh Renuse; Sneha M Pinto; Rakesh Sharma; Harsh Pawar; Nirujogi Raja Sekhar; Ajeet Kumar Mohanty; Derese Getnet; Yi Yang; Jun Zhong; Aditya P Dash; Robert M MacCallum; Bernard Delanghe; Godfree Mlambo; Ashwani Kumar; T S Keshava Prasad; Mobolaji Okulate; Nirbhay Kumar; Akhilesh Pandey
Journal:  Genome Res       Date:  2011-07-27       Impact factor: 9.043

10.  PRESTA: associating promoter sequences with information on gene expression.

Authors:  Václav Mach
Journal:  Genome Biol       Date:  2002-08-21       Impact factor: 13.583

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