Literature DB >> 10387048

Direct measurement of the pKa of aspartic acid 26 in Lactobacillus casei dihydrofolate reductase: implications for the catalytic mechanism.

M G Casarotto1, J Basran, R Badii, K H Sze, G C Roberts.   

Abstract

The ionization state of aspartate 26 in Lactobacillus casei dihydrofolate reductase has been investigated by selectively labeling the enzyme with [13Cgamma] aspartic acid and measuring the 13C chemical shifts in the apo, folate-enzyme, and dihydrofolate-enzyme complexes. Our results indicate that no aspartate residue has a pKa greater than approximately 4.8 in any of the three complexes studied. The resonance of aspartate 26 in the dihydrofolate-enzyme complex has been assigned by site-directed mutagenesis; aspartate 26 is found to have a pKa value of less than 4 in this complex. Such a low pKa value makes it most unlikely that the ionization of this residue is responsible for the observed pH profile of hydride ion transfer [apparent pKa = 6.0; Andrews, J., Fierke, C. A., Birdsall, B., Ostler, G., Feeney, J., Roberts, G. C. K., and Benkovic, S. J. (1989) Biochemistry 28, 5743-5750]. Furthermore, the downfield chemical shift of the Asp 26 (13)Cgamma resonance in the dihydrofolate-enzyme complex provides experimental evidence that the pteridine ring of dihydrofolate is polarized when bound to the enzyme. We propose that this polarization of dihydrofolate acts as the driving force for protonation of the electron-rich O4 atom which occurs in the presence of NADPH. After this protonation of the substrate, a network of hydrogen bonds between O4, N5 and a bound water molecule facilitates transfer of the proton to N5 and transfer of a hydride ion from NADPH to the C6 atom to complete the reduction process.

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Year:  1999        PMID: 10387048     DOI: 10.1021/bi990301p

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

1.  One site fits both: a model for the ternary complex of folate + NADPH in R67 dihydrofolate reductase, a D2 symmetric enzyme.

Authors:  E E Howell; U Shukla; S N Hicks; R D Smiley; L A Kuhn; M I Zavodszky
Journal:  J Comput Aided Mol Des       Date:  2001-11       Impact factor: 3.686

2.  Structural and kinetic evidence for an extended hydrogen-bonding network in catalysis of methyl group transfer. Role of an active site asparagine residue in activation of methyl transfer by methyltransferases.

Authors:  Tzanko I Doukov; Hisashi Hemmi; Catherine L Drennan; Stephen W Ragsdale
Journal:  J Biol Chem       Date:  2006-12-15       Impact factor: 5.157

3.  Protein motions during catalysis by dihydrofolate reductases.

Authors:  Rudolf K Allemann; Rhiannon M Evans; Lai-hock Tey; Giovanni Maglia; Jiayun Pang; Robert Rodriguez; Paul J Shrimpton; Richard S Swanwick
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

4.  Toward resolving the catalytic mechanism of dihydrofolate reductase using neutron and ultrahigh-resolution X-ray crystallography.

Authors:  Qun Wan; Brad C Bennett; Mark A Wilson; Andrey Kovalevsky; Paul Langan; Elizabeth E Howell; Chris Dealwis
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-01       Impact factor: 11.205

5.  Neutron diffraction studies of Escherichia coli dihydrofolate reductase complexed with methotrexate.

Authors:  Brad Bennett; Paul Langan; Leighton Coates; Marat Mustyakimov; Benno Schoenborn; Elizabeth E Howell; Chris Dealwis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-27       Impact factor: 11.205

6.  Role of water in the catalytic cycle of E. coli dihydrofolate reductase.

Authors:  Paul Shrimpton; Rudolf K Allemann
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

7.  Hydride transfer during catalysis by dihydrofolate reductase from Thermotoga maritima.

Authors:  Giovanni Maglia; Masood H Javed; Rudolf K Allemann
Journal:  Biochem J       Date:  2003-09-01       Impact factor: 3.857

8.  Crystal structure of a type II dihydrofolate reductase catalytic ternary complex.

Authors:  Joseph M Krahn; Michael R Jackson; Eugene F DeRose; Elizabeth E Howell; Robert E London
Journal:  Biochemistry       Date:  2007-12-04       Impact factor: 3.162

9.  Capturing the Catalytic Proton of Dihydrofolate Reductase: Implications for General Acid-Base Catalysis.

Authors:  Qun Wan; Brad C Bennett; Troy Wymore; Zhihong Li; Mark A Wilson; Charles L Brooks; Paul Langan; Andrey Kovalevsky; Chris G Dealwis
Journal:  ACS Catal       Date:  2021-04-28       Impact factor: 13.084

  9 in total

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