Literature DB >> 10371154

Analysis of gene expression data using self-organizing maps.

P Törönen1, M Kolehmainen, G Wong, E Castrén.   

Abstract

DNA microarray technologies together with rapidly increasing genomic sequence information is leading to an explosion in available gene expression data. Currently there is a great need for efficient methods to analyze and visualize these massive data sets. A self-organizing map (SOM) is an unsupervised neural network learning algorithm which has been successfully used for the analysis and organization of large data files. We have here applied the SOM algorithm to analyze published data of yeast gene expression and show that SOM is an excellent tool for the analysis and visualization of gene expression profiles.

Entities:  

Mesh:

Year:  1999        PMID: 10371154     DOI: 10.1016/s0014-5793(99)00524-4

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  81 in total

1.  Large-scale clustering of cDNA-fingerprinting data.

Authors:  R Herwig; A J Poustka; C Müller; C Bull; H Lehrach; J O'Brien
Journal:  Genome Res       Date:  1999-11       Impact factor: 9.043

Review 2.  Discovering patterns in microarray data.

Authors:  H B Burke
Journal:  Mol Diagn       Date:  2000-12

3.  Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons.

Authors:  Alvaro Mateos; Joaquín Dopazo; Ronald Jansen; Yuhai Tu; Mark Gerstein; Gustavo Stolovitzky
Journal:  Genome Res       Date:  2002-11       Impact factor: 9.043

Review 4.  Comparative molecular surface analysis: a novel tool for drug design and molecular diversity studies.

Authors:  Jaroslaw Polanski; Rafal Gieleciak
Journal:  Mol Divers       Date:  2003       Impact factor: 2.943

5.  ExpressYourself: A modular platform for processing and visualizing microarray data.

Authors:  Nicholas M Luscombe; Thomas E Royce; Paul Bertone; Nathaniel Echols; Christine E Horak; Joseph T Chang; Michael Snyder; Mark Gerstein
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

6.  GEPAS: A web-based resource for microarray gene expression data analysis.

Authors:  Javier Herrero; Fátima Al-Shahrour; Ramón Díaz-Uriarte; Alvaro Mateos; Juan M Vaquerizas; Javier Santoyo; Joaquín Dopazo
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

7.  Integration of genomic datasets to predict protein complexes in yeast.

Authors:  Ronald Jansen; Ning Lan; Jiang Qian; Mark Gerstein
Journal:  J Struct Funct Genomics       Date:  2002

8.  Effects of antidepressant drug imipramine on gene expression in rat prefrontal cortex.

Authors:  Juha E A Knuuttila; Petri Törönen; Eero Castrén
Journal:  Neurochem Res       Date:  2004-06       Impact factor: 3.996

9.  SITC cancer immunotherapy resource document: a compass in the land of biomarker discovery.

Authors:  Siwen Hu-Lieskovan; Srabani Bhaumik; Kavita Dhodapkar; Jean-Charles J B Grivel; Sumati Gupta; Brent A Hanks; Sylvia Janetzki; Thomas O Kleen; Yoshinobu Koguchi; Amanda W Lund; Cristina Maccalli; Yolanda D Mahnke; Ruslan D Novosiadly; Senthamil R Selvan; Tasha Sims; Yingdong Zhao; Holden T Maecker
Journal:  J Immunother Cancer       Date:  2020-12       Impact factor: 13.751

Review 10.  Systems analysis of high-throughput data.

Authors:  Rosemary Braun
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.