Literature DB >> 10366854

Selection, history and chemistry: the three faces of the genetic code.

R D Knight1, S J Freeland, L F Landweber.   

Abstract

The genetic code might be a historical accident that was fixed in the last common ancestor of modern organisms. 'Adaptive', 'historical' and 'chemical' arguments, however, challenge such a 'frozen accident' model. These arguments propose that the current code is somehow optimal, reflects the expansion of a more primitive code to include more amino acids, or is a consequence of direct chemical interactions between RNA and amino acids, respectively. Such models are not mutually exclusive, however. They can be reconciled by an evolutionary model whereby stereochemical interactions shaped the initial code, which subsequently expanded through biosynthetic modification of encoded amino acids and, finally, was optimized through codon reassignment. Alternatively, all three forces might have acted in concert to assign the 20 'natural' amino acids to their present positions in the genetic code.

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Substances:

Year:  1999        PMID: 10366854     DOI: 10.1016/s0968-0004(99)01392-4

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  52 in total

1.  Guilt by association: the arginine case revisited.

Authors:  R D Knight; L F Landweber
Journal:  RNA       Date:  2000-04       Impact factor: 4.942

2.  The scene of a frozen accident.

Authors:  A D Ellington; M Khrapov; C A Shaw
Journal:  RNA       Date:  2000-04       Impact factor: 4.942

3.  Testing a biosynthetic theory of the genetic code: fact or artifact?

Authors:  T A Ronneberg; L F Landweber; S J Freeland
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

Review 4.  The early phases of genetic code origin: conjectures on the evolution of coded catalysis.

Authors:  Massimo Di Giulio
Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

Review 5.  The case for an error minimizing standard genetic code.

Authors:  Stephen J Freeland; Tao Wu; Nick Keulmann
Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

6.  Amplification of diverse catalytic properties of evolving molecules in a simulated hydrothermal environment.

Authors:  Shinnosuke Yokoyama; Akihiro Koyama; Atsushi Nemoto; Hajime Honda; Ei-ichi Imai; Kuniyuki Hatori; Koichiro Matsuno
Journal:  Orig Life Evol Biosph       Date:  2003-12       Impact factor: 1.950

7.  Codon usage decreases the error minimization within the genetic code.

Authors:  Chen-Tseh Zhu; Xiao-Bin Zeng; Wei-Da Huang
Journal:  J Mol Evol       Date:  2003-11       Impact factor: 2.395

8.  No accident: genetic codes freeze in error-correcting patterns of the standard genetic code.

Authors:  David H Ardell; Guy Sella
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2002-11-29       Impact factor: 6.237

9.  On the classes of aminoacyl-tRNA synthetases, amino acids and the genetic code.

Authors:  Andre R O Cavalcanti; Elisa Soares Leite; Benício B Neto; Ricardo Ferreira
Journal:  Orig Life Evol Biosph       Date:  2004-08       Impact factor: 1.950

10.  Imprints of the genetic code in the ribosome.

Authors:  David B F Johnson; Lei Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-12       Impact factor: 11.205

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