Literature DB >> 10361089

DNA structure: cations in charge?

L McFail-Isom1, C C Sines, L D Williams.   

Abstract

Recent X-ray diffraction, NMR spectroscopy and molecular mechanics results suggest that monovalent cations selectively partition into the minor groove of AT-tracts in DNA. These observations are consistent with DNA deformation by electrostatic collapse around areas of uneven cation density. This model predicts the occurrence of known DNA deformations, such as AT-tract bending and changes in the minor-groove width.

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Year:  1999        PMID: 10361089     DOI: 10.1016/S0959-440X(99)80040-2

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  54 in total

1.  Sequence-specific binding of counterions to B-DNA.

Authors:  V P Denisov; B Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

2.  A theoretical model for the prediction of sequence-dependent nucleosome thermodynamic stability.

Authors:  C Anselmi; G Bocchinfuso; P De Santis; M Savino; A Scipioni
Journal:  Biophys J       Date:  2000-08       Impact factor: 4.033

3.  Effect of a neutralized phosphate backbone on the minor groove of B-DNA: molecular dynamics simulation studies.

Authors:  Donald Hamelberg; Loren Dean Williams; W David Wilson
Journal:  Nucleic Acids Res       Date:  2002-08-15       Impact factor: 16.971

4.  Exploring the counterion atmosphere around DNA: what can be learned from molecular dynamics simulations?

Authors:  Manuel Rueda; Elena Cubero; Charles A Laughton; Modesto Orozco
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

5.  Biomolecular cryocrystallography: structural changes during flash-cooling.

Authors:  Bertil Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-29       Impact factor: 11.205

6.  Ion motions in molecular dynamics simulations on DNA.

Authors:  Sergei Y Ponomarev; Kelly M Thayer; David L Beveridge
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-01       Impact factor: 11.205

Review 7.  Nucleosome structural studies.

Authors:  Song Tan; Curt A Davey
Journal:  Curr Opin Struct Biol       Date:  2010-12-19       Impact factor: 6.809

8.  The Role of Correlation and Solvation in Ion Interactions with B-DNA.

Authors:  Maria L Sushko; Dennis G Thomas; Suzette A Pabit; Lois Pollack; Alexey V Onufriev; Nathan A Baker
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

9.  Na+ shows a markedly higher potential than K+ in DNA compaction in a crowded environment.

Authors:  Anatoly A Zinchenko; Kenichi Yoshikawa
Journal:  Biophys J       Date:  2005-03-18       Impact factor: 4.033

Review 10.  A review of the role of the sequence-dependent electrostatic landscape in DNA alkylation patterns.

Authors:  Barry Gold; Luis M Marky; Michael P Stone; Loren D Williams
Journal:  Chem Res Toxicol       Date:  2006-11       Impact factor: 3.739

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