Literature DB >> 10353822

Mechanisms of monovalent cation action in enzyme catalysis: the first stage of the tryptophan synthase beta-reaction.

E Woehl1, M F Dunn.   

Abstract

The tryptophan synthase bienzyme complex is activated and regulated by the allosteric action of monovalent cations (MVCs). The kinetic dissection of the first stage (stage I) in the beta-reaction of tryptophan synthase, the reaction of L-serine with pyridoxal 5'-phosphate at the beta-site to give the alpha-aminoacrylate Schiff base intermediate, E(A-A), is here examined in the absence and presence of MVCs. This analysis reveals which of the individual steps are greatly affected in stage I and how the ground states and transition states are affected by MVCs. Kinetic studies in combination with a detailed relaxation kinetic analysis to determine the specific rate constants for the conversion of the L-Ser external aldimine, E(Aex1), to E(A-A) show that the primary kinetic isotope effect for proton abstraction from Calpha of the E(Aex1) species changes from 4.0 +/- 0.4 in the absence of MVCs to a value of 5.9 +/- 0.5 in the presence of Na+, indicating that the nature of the transition state for this C-H scission is significantly perturbed by the MVC effect. The E(A-A) species was found to exist in two conformations with different activities, the ratio of which is affected by the presence of MVCs. It is shown that changes in the rate constants of stage I are important in establishing the ratio of active to inactive conformations of the E(A-A) species. Consequently, the MVC effect alters the relative energies of both the transition states and the ground states for selected steps in stage I of the pathway. Hence, interactions at the MVC site give rise to a fine-tuning of the covalent bonding interactions between active site residues and the reacting substrate during the conformational cycle of the bienzyme complex.

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Year:  1999        PMID: 10353822     DOI: 10.1021/bi982918x

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

Review 1.  Allosteric regulation of substrate channeling and catalysis in the tryptophan synthase bienzyme complex.

Authors:  Michael F Dunn
Journal:  Arch Biochem Biophys       Date:  2012-02-02       Impact factor: 4.013

2.  Mechanism of Na(+) binding to thrombin resolved by ultra-rapid kinetics.

Authors:  Stefano Gianni; Ylva Ivarsson; Alaji Bah; Leslie A Bush-Pelc; Enrico Di Cera
Journal:  Biophys Chem       Date:  2007-09-29       Impact factor: 2.352

Review 3.  Tryptophan synthase: a mine for enzymologists.

Authors:  Samanta Raboni; Stefano Bettati; Andrea Mozzarelli
Journal:  Cell Mol Life Sci       Date:  2009-04-22       Impact factor: 9.261

4.  Allostery and substrate channeling in the tryptophan synthase bienzyme complex: evidence for two subunit conformations and four quaternary states.

Authors:  Dimitri Niks; Eduardo Hilario; Adam Dierkers; Huu Ngo; Dan Borchardt; Thomas J Neubauer; Li Fan; Leonard J Mueller; Michael F Dunn
Journal:  Biochemistry       Date:  2013-09-06       Impact factor: 3.162

5.  Tryptophan synthase: structure and function of the monovalent cation site.

Authors:  Adam T Dierkers; Dimitri Niks; Ilme Schlichting; Michael F Dunn
Journal:  Biochemistry       Date:  2009-11-24       Impact factor: 3.162

6.  Catalytic roles of βLys87 in tryptophan synthase: (15)N solid state NMR studies.

Authors:  Bethany G Caulkins; Chen Yang; Eduardo Hilario; Li Fan; Michael F Dunn; Leonard J Mueller
Journal:  Biochim Biophys Acta       Date:  2015-02-14

Review 7.  Pyridoxal 5'-Phosphate-Dependent Enzymes at the Crossroads of Host-Microbe Tryptophan Metabolism.

Authors:  Barbara Cellini; Teresa Zelante; Mirco Dindo; Marina M Bellet; Giorgia Renga; Luigina Romani; Claudio Costantini
Journal:  Int J Mol Sci       Date:  2020-08-13       Impact factor: 5.923

8.  Light-Regulation of Tryptophan Synthase by Combining Protein Design and Enzymology.

Authors:  Andrea C Kneuttinger; Stefanie Zwisele; Kristina Straub; Astrid Bruckmann; Florian Busch; Thomas Kinateder; Barbara Gaim; Vicki H Wysocki; Rainer Merkl; Reinhard Sterner
Journal:  Int J Mol Sci       Date:  2019-10-15       Impact factor: 5.923

Review 9.  Allosteric regulation of substrate channeling: Salmonella typhimurium tryptophan synthase.

Authors:  Rittik K Ghosh; Eduardo Hilario; Chia-En A Chang; Leonard J Mueller; Michael F Dunn
Journal:  Front Mol Biosci       Date:  2022-09-12
  9 in total

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