Literature DB >> 10353197

A novel NMR experiment for the sequential assignment of proline residues and proline stretches in 13C/15N-labeled proteins.

M J Bottomley1, M J Macias, Z Liu, M Sattler.   

Abstract

A new pulse sequence is described for the sequential assignment of proline residues in 13C/15N-labeled proteins by correlating C delta and C alpha chemical shifts of proline residues with the H alpha chemical shift of the preceding residue. Notably, the experiment can provide the sequential connectivities in poly-proline stretches, which cannot be determined using standard triple resonance experiments. Excellent solvent suppression is achieved by coherence selection via a heteronuclear gradient echo. The new pulse sequence has been successfully applied to the 11 kDa HRDC domain.

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Year:  1999        PMID: 10353197     DOI: 10.1023/a:1008393903034

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  19 in total

1.  Characterization of the WW domain of human yes-associated protein and its polyproline-containing ligands.

Authors:  H I Chen; A Einbond; S J Kwak; H Linn; E Koepf; S Peterson; J W Kelly; M Sudol
Journal:  J Biol Chem       Date:  1997-07-04       Impact factor: 5.157

Review 2.  A putative nucleic acid-binding domain in Bloom's and Werner's syndrome helicases.

Authors:  V Morozov; A R Mushegian; E V Koonin; P Bork
Journal:  Trends Biochem Sci       Date:  1997-11       Impact factor: 13.807

3.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors:  C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

Review 4.  The structure and function of proline-rich regions in proteins.

Authors:  M P Williamson
Journal:  Biochem J       Date:  1994-01-15       Impact factor: 3.857

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Regulatory intramolecular association in a tyrosine kinase of the Tec family.

Authors:  A H Andreotti; S C Bunnell; S Feng; L J Berg; S L Schreiber
Journal:  Nature       Date:  1997-01-02       Impact factor: 49.962

7.  Structure of the WW domain of a kinase-associated protein complexed with a proline-rich peptide.

Authors:  M J Macias; M Hyvönen; E Baraldi; J Schultz; M Sudol; M Saraste; H Oschkinat
Journal:  Nature       Date:  1996-08-15       Impact factor: 49.962

8.  Spin-locked multiple quantum coherence for signal enhancement in heteronuclear multidimensional NMR experiments.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  A general enhancement scheme in heteronuclear multidimensional NMR employing pulsed field gradients.

Authors:  J Schleucher; M Schwendinger; M Sattler; P Schmidt; O Schedletzky; S J Glaser; O W Sørensen; C Griesinger
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

10.  Formin binding proteins bear WWP/WW domains that bind proline-rich peptides and functionally resemble SH3 domains.

Authors:  D C Chan; M T Bedford; P Leder
Journal:  EMBO J       Date:  1996-03-01       Impact factor: 11.598

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  14 in total

1.  HA-detected experiments for the backbone assignment of intrinsically disordered proteins.

Authors:  Sampo Mäntylahti; Olli Aitio; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2010-05-01       Impact factor: 2.835

2.  Application of 3D NMR for Structure Determination of Peptide Natural Products.

Authors:  Fan Zhang; Navid Adnani; Emmanuel Vazquez-Rivera; Doug R Braun; Marco Tonelli; David R Andes; Tim S Bugni
Journal:  J Org Chem       Date:  2015-08-21       Impact factor: 4.354

3.  Bridge over troubled proline: assignment of intrinsically disordered proteins using (HCA)CON(CAN)H and (HCA)N(CA)CO(N)H experiments concomitantly with HNCO and i(HCA)CO(CA)NH.

Authors:  Maarit Hellman; Henni Piirainen; Veli-Pekka Jaakola; Perttu Permi
Journal:  J Biomol NMR       Date:  2013-12-18       Impact factor: 2.835

4.  Extension of the HA-detection based approach: (HCA)CON(CA)H and (HCA)NCO(CA)H experiments for the main-chain assignment of intrinsically disordered proteins.

Authors:  Sampo Mäntylahti; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2011-01-25       Impact factor: 2.835

5.  The ubiquitin binding region of the Smurf HECT domain facilitates polyubiquitylation and binding of ubiquitylated substrates.

Authors:  Abiodun A Ogunjimi; Silke Wiesner; Douglas J Briant; Xaralabos Varelas; Frank Sicheri; Julie Forman-Kay; Jeffrey L Wrana
Journal:  J Biol Chem       Date:  2009-12-21       Impact factor: 5.157

6.  A six-dimensional alpha proton detection-based APSY experiment for backbone assignment of intrinsically disordered proteins.

Authors:  Xuejun Yao; Stefan Becker; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2014-11-04       Impact factor: 2.835

7.  Sequential assignment of proline-rich regions in proteins: application to modular binding domain complexes.

Authors:  V Kanelis; L Donaldson; D R Muhandiram; D Rotin; J D Forman-Kay; L E Kay
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

8.  HNCAN pulse sequences for sequential backbone resonance assignment across proline residues in perdeuterated proteins.

Authors:  F Löhr; S Pfeiffer; Y J Lin; J Hartleib; O Klimmek; H Rüterjans
Journal:  J Biomol NMR       Date:  2000-12       Impact factor: 2.835

9.  1H, 13C and 15N sequence-specific resonance assignment of the PSCD4 domain of diatom cell wall protein pleuralin-1 [etter].

Authors:  M Wenzler; E Brunner; N Kröger; G Lehmann; M Sumper; H R Kalbitze
Journal:  J Biomol NMR       Date:  2001-06       Impact factor: 2.835

10.  NMR determines transient structure and dynamics in the disordered C-terminal domain of WASp interacting protein.

Authors:  Noam Y Haba; Renana Gross; Jiri Novacek; Hadassa Shaked; Lukas Zidek; Mira Barda-Saad; Jordan H Chill
Journal:  Biophys J       Date:  2013-07-16       Impact factor: 4.033

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