Literature DB >> 10346904

Aspartate-132 in cytochrome c oxidase from Rhodobacter sphaeroides is involved in a two-step proton transfer during oxo-ferryl formation.

I A Smirnova1, P Adelroth, R B Gennis, P Brzezinski.   

Abstract

The aspartate-132 in subunit I (D(I-132)) of cytochrome c oxidase from Rhodobacter sphaeroides is located on the cytoplasmic surface of the protein at the entry point of a proton-transfer pathway used for both substrate and pumped protons (D-pathway). Replacement of D(I-132) by its nonprotonatable analogue asparagine (DN(I-132)) has been shown to result in a reduced overall activity of the enzyme and impaired proton pumping. The results from this study show that during oxidation of the fully reduced enzyme the reaction was inhibited after formation of the oxo-ferryl (F) intermediate (tau congruent with 120 microseconds). In contrast to the wild-type enzyme, in the mutant enzyme formation of this intermediate was not associated with proton uptake from solution, which is the reason the DN(I-132) enzyme does not pump protons. The proton needed to form F was presumably taken from a protonatable group in the D-pathway (e.g., E(I-286)), which indicates that in the wild-type enzyme the proton transfer during F formation takes place in two steps: proton transfer from the group in the pathway is followed by faster reprotonation from the bulk solution, through D(I-132). Unlike the wild-type enzyme, in which F formation is coupled to internal electron transfer from CuA to heme a, in the DN(I-132) enzyme this electron transfer was uncoupled from formation of the F intermediate, which presumably is due to the impaired charge-compensating proton uptake from solution. In the presence of arachidonic acid which has been shown to stimulate the turnover activity of the DN(I-132) enzyme (Fetter et al. (1996) FEBS Lett. 393, 155), proton uptake with a time constant of approximately 2 ms was observed. However, no proton uptake associated with formation of F (tau congruent with 120 micros) was observed, which indicates that arachidonic acid can replace the role of D(I-132), but it cannot transfer protons as fast as the Asp. The results from this study show that D(I-132) is crucial for efficient transfer of protons into the enzyme and that in the DN(I-132) mutant enzyme there is a "kinetic barrier" for proton transfer into the D-pathway.

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Year:  1999        PMID: 10346904     DOI: 10.1021/bi982865j

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  21 in total

1.  Initiation of the proton pump of cytochrome c oxidase.

Authors:  Ilya Belevich; Elena Gorbikova; Nikolai P Belevich; Virve Rauhamäki; Mårten Wikström; Michael I Verkhovsky
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

2.  Storage of an excess proton in the hydrogen-bonded network of the d-pathway of cytochrome C oxidase: identification of a protonated water cluster.

Authors:  Jiancong Xu; Martyn A Sharpe; Ling Qin; Shelagh Ferguson-Miller; Gregory A Voth
Journal:  J Am Chem Soc       Date:  2007-02-20       Impact factor: 15.419

3.  Functional role of Thr-312 and Thr-315 in the proton-transfer pathway in ba3 Cytochrome c oxidase from Thermus thermophilus.

Authors:  Irina Smirnova; Joachim Reimann; Christoph von Ballmoos; Hsin-Yang Chang; Robert B Gennis; James A Fee; Peter Brzezinski; Pia Adelroth
Journal:  Biochemistry       Date:  2010-08-24       Impact factor: 3.162

4.  Decoupling mutations in the D-channel of the aa(3)-type cytochrome c oxidase from Rhodobacter sphaeroides suggest that a continuous hydrogen-bonded chain of waters is essential for proton pumping.

Authors:  Jiapeng Zhu; Huazhi Han; Ashtamurthy Pawate; Robert B Gennis
Journal:  Biochemistry       Date:  2010-06-01       Impact factor: 3.162

5.  Alternative initial proton acceptors for the D pathway of Rhodobacter sphaeroides cytochrome c oxidase.

Authors:  Lakshman Varanasi; Jonathan Hosler
Journal:  Biochemistry       Date:  2011-03-21       Impact factor: 3.162

6.  Exploration of the cytochrome c oxidase pathway puzzle and examination of the origin of elusive mutational effects.

Authors:  Suman Chakrabarty; Ida Namslauer; Peter Brzezinski; Arieh Warshel
Journal:  Biochim Biophys Acta       Date:  2011-01-10

7.  Crystallographic location and mutational analysis of Zn and Cd inhibitory sites and role of lipidic carboxylates in rescuing proton path mutants in cytochrome c oxidase.

Authors:  Ling Qin; Denise A Mills; Carrie Hiser; Anna Murphree; R Michael Garavito; Shelagh Ferguson-Miller; Jonathan Hosler
Journal:  Biochemistry       Date:  2007-05-04       Impact factor: 3.162

8.  Impaired proton pumping in cytochrome c oxidase upon structural alteration of the D pathway.

Authors:  Håkan Lepp; Lina Salomonsson; Jia-Peng Zhu; Robert B Gennis; Peter Brzezinski
Journal:  Biochim Biophys Acta       Date:  2008-04-16

9.  Role of aspartate 132 at the orifice of a proton pathway in cytochrome c oxidase.

Authors:  Ann-Louise Johansson; Martin Högbom; Jens Carlsson; Robert B Gennis; Peter Brzezinski
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-14       Impact factor: 11.205

10.  Redox-coupled proton translocation in biological systems: proton shuttling in cytochrome c oxidase.

Authors:  Andreas Namslauer; Ashtamurthy S Pawate; Robert B Gennis; Peter Brzezinski
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-15       Impact factor: 11.205

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