Literature DB >> 10339816

FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G + C content.

J Ishikawa1, K Hotta.   

Abstract

FramePlot is a web-based tool for predicting protein-coding regions in bacterial DNA with a high G + C content, such as Streptomyces. The graphical output provides for easy distinction of protein-coding regions from non-coding regions. The plot is a clickable map. Clicking on an ORF provides not only the nucleotide sequence but also its deduced amino acid sequence. These sequences can then be compared to the NCBI sequence database over the Internet. The program is freely available for academic purposes at http://www.nih.go.jp/jun/cgi-bin/frameplot.pl.

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Year:  1999        PMID： 10339816     DOI： 10.1111/j.1574-6968.1999.tb13576.x

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN： 0378-1097            Impact factor:   2.742


  131 in total

1.  Organization of the biosynthetic gene cluster for the polyketide anthelmintic macrolide avermectin in Streptomyces avermitilis.

Authors:  H Ikeda; T Nonomiya; M Usami; T Ohta; S Omura
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  ATP-binding cassette transport system involved in regulation of morphological differentiation in response to glucose in Streptomyces griseus.

Authors:  Jeong-Woo Seo; Yasuo Ohnishi; Aiko Hirata; Sueharu Horinouchi
Journal:  J Bacteriol       Date:  2002-01       Impact factor: 3.490

3.  Biosynthetic gene cluster of simocyclinone, a natural multihybrid antibiotic.

Authors:  A Trefzer; S Pelzer; J Schimana; S Stockert; C Bihlmaier; H-P Fiedler; K Welzel; A Vente; A Bechthold
Journal:  Antimicrob Agents Chemother       Date:  2002-05       Impact factor: 5.191

4.  Adaptive divergence in experimental populations of Pseudomonas fluorescens. I. Genetic and phenotypic bases of wrinkly spreader fitness.

Authors:  Andrew J Spiers; Sophie G Kahn; John Bohannon; Michael Travisano; Paul B Rainey
Journal:  Genetics       Date:  2002-05       Impact factor: 4.562

Review 5.  Analysis of an 8.1-kb DNA fragment contiguous with the erythromycin gene cluster of Saccharopolyspora erythraea in the eryCI-flanking region.

Authors:  Andrew R Reeves; Gerhard Weber; William H Cernota; J Mark Weber
Journal:  Antimicrob Agents Chemother       Date:  2002-12       Impact factor: 5.191

6.  The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans.

Authors:  Yuko Sasaki; Jun Ishikawa; Atsushi Yamashita; Kenshiro Oshima; Tsuyoshi Kenri; Keiko Furuya; Chie Yoshino; Atsuko Horino; Tadayoshi Shiba; Tsuguo Sasaki; Masahira Hattori
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

7.  A genetic mechanism for deletion of the ser2 gene cluster and formation of rough morphological variants of Mycobacterium avium.

Authors:  T M Eckstein; J M Inamine; M L Lambert; J T Belisle
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

8.  Cloning and engineering of the cinnamycin biosynthetic gene cluster from Streptomyces cinnamoneus cinnamoneus DSM 40005.

Authors:  D A Widdick; H M Dodd; P Barraille; J White; T H Stein; K F Chater; M J Gasson; M J Bibb
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-17       Impact factor: 11.205

9.  Detailed genomic analysis of the Wbeta and gamma phages infecting Bacillus anthracis: implications for evolution of environmental fitness and antibiotic resistance.

Authors:  Raymond Schuch; Vincent A Fischetti
Journal:  J Bacteriol       Date:  2006-04       Impact factor: 3.490

10.  The product of a developmental gene, crgA, that coordinates reproductive growth in Streptomyces belongs to a novel family of small actinomycete-specific proteins.

Authors:  Ricardo Del Sol; Andrew Pitman; Paul Herron; Paul Dyson
Journal:  J Bacteriol       Date:  2003-11       Impact factor: 3.490
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