Literature DB >> 10330122

Comparative mapping of the region of human chromosome 7 deleted in williams syndrome.

U DeSilva1, H Massa, B J Trask, E D Green.   

Abstract

Williams syndrome (WS) is a complex developmental disorder resulting from the deletion of a large (approximately 1.5-2 Mb) segment of human chromosome 7q11.23. Physical mapping studies have revealed that this deleted region, which contains a number of known genes, is flanked by several large, nearly identical blocks of DNA. The presence of such highly related DNA segments in close physical proximity to one another has hampered efforts to elucidate the precise long-range organization of this segment of chromosome 7. To gain insight about the structure and evolutionary origins of this important and complex genomic region, we have constructed a fully contiguous bacterial artificial chromosome (BAC) and P1-derived artificial chromosome (PAC) contig map encompassing the corresponding region on mouse chromosome 5. In contrast to the difficulties encountered in constructing a clone-based physical map of the human WS region, the BAC/PAC-based map of the mouse WS region was straightforward to construct, with no evidence of large duplicated segments, such as those encountered in the human WS region. To confirm this difference, representative human and mouse BACs were used as probes for performing fluorescence in situ hybridization (FISH) to metaphase and interphase chromosomes. Human BACs derived from the nonunique portion of the WS region hybridized to multiple, closely spaced regions on human chromosome 7q11.23. In contrast, corresponding mouse BACs hybridized to a single site on mouse chromosome 5. Furthermore, FISH analysis revealed the presence of duplicated segments within the WS region of various nonhuman primates (chimpanzee, gorilla, orangutan, and gibbon). Hybridization was also noted at the genomic locations corresponding to human chromosome 7p22 and 7q22 in human, chimpanzee, and gorilla, but not in the other animal species examined. Together, these results indicate that the WS region is associated with large, duplicated blocks of DNA on human chromosome 7q11.23 as well as the corresponding genomic regions of other nonhuman primates. However, such duplications are not present in the mouse.

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Mesh:

Year:  1999        PMID: 10330122      PMCID: PMC310780     

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  43 in total

1.  The gene for replication factor C subunit 2 (RFC2) is within the 7q11.23 Williams syndrome deletion.

Authors:  R Peoples; L Perez-Jurado; Y K Wang; P Kaplan; U Francke
Journal:  Am J Hum Genet       Date:  1996-06       Impact factor: 11.025

Review 2.  Human/mouse homology relationships.

Authors:  R W DeBry; M F Seldin
Journal:  Genomics       Date:  1996-05-01       Impact factor: 5.736

3.  7q11.23 deletions in Williams syndrome arise as a consequence of unequal meiotic crossover.

Authors:  Z Urbán; C Helms; G Fekete; K Csiszár; D Bonnet; A Munnich; H Donis-Keller; C D Boyd
Journal:  Am J Hum Genet       Date:  1996-10       Impact factor: 11.025

4.  Genes for two autosomal recessive forms of chronic granulomatous disease assigned to 1q25 (NCF2) and 7q11.23 (NCF1).

Authors:  U Francke; C L Hsieh; B E Foellmer; K J Lomax; H L Malech; T L Leto
Journal:  Am J Hum Genet       Date:  1990-09       Impact factor: 11.025

5.  Delineation of 7q11.2 deletions associated with Williams-Beuren syndrome and mapping of a repetitive sequence to within and to either side of the common deletion.

Authors:  W P Robinson; J Waslynka; F Bernasconi; M Wang; S Clark; D Kotzot; A Schinzel
Journal:  Genomics       Date:  1996-05-15       Impact factor: 5.736

6.  Molecular definition of the chromosome 7 deletion in Williams syndrome and parent-of-origin effects on growth.

Authors:  L A Pérez Jurado; R Peoples; P Kaplan; B C Hamel; U Francke
Journal:  Am J Hum Genet       Date:  1996-10       Impact factor: 11.025

7.  LIM-kinase deleted in Williams syndrome.

Authors:  M Tassabehji; K Metcalfe; W D Fergusson; M J Carette; J K Dore; D Donnai; A P Read; C Pröschel; N J Gutowski; X Mao; D Sheer
Journal:  Nat Genet       Date:  1996-07       Impact factor: 38.330

8.  Identification of genes from a 500-kb region at 7q11.23 that is commonly deleted in Williams syndrome patients.

Authors:  L R Osborne; D Martindale; S W Scherer; X M Shi; J Huizenga; H H Heng; T Costa; B Pober; L Lew; J Brinkman; J Rommens; B Koop; L C Tsui
Journal:  Genomics       Date:  1996-09-01       Impact factor: 5.736

9.  LIM-kinase1 hemizygosity implicated in impaired visuospatial constructive cognition.

Authors:  J M Frangiskakis; A K Ewart; C A Morris; C B Mervis; J Bertrand; B F Robinson; B P Klein; G J Ensing; L A Everett; E D Green; C Pröschel; N J Gutowski; M Noble; D L Atkinson; S J Odelberg; M T Keating
Journal:  Cell       Date:  1996-07-12       Impact factor: 41.582

10.  Use of an intron polymorphism to localize the tropoelastin gene to mouse chromosome 5 in a region of linkage conservation with human chromosome 7.

Authors:  K S Wydner; J L Sechler; C D Boyd; H C Passmore
Journal:  Genomics       Date:  1994-09-01       Impact factor: 5.736

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  11 in total

1.  The mosaic structure of human pericentromeric DNA: a strategy for characterizing complex regions of the human genome.

Authors:  J E Horvath; S Schwartz; E E Eichler
Journal:  Genome Res       Date:  2000-06       Impact factor: 9.043

2.  Generation and comparative analysis of approximately 3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11.23 implicated in Williams syndrome.

Authors:  Udaya DeSilva; Laura Elnitski; Jacquelyn R Idol; Johannah L Doyle; Weiniu Gan; James W Thomas; Scott Schwartz; Nicole L Dietrich; Stephen M Beckstrom-Sternberg; Jennifer C McDowell; Robert W Blakesley; Gerard G Bouffard; Pamela J Thomas; Jeffrey W Touchman; Webb Miller; Eric D Green
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

3.  A physical map, including a BAC/PAC clone contig, of the Williams-Beuren syndrome--deletion region at 7q11.23.

Authors:  R Peoples; Y Franke; Y K Wang; L Pérez-Jurado; T Paperna; M Cisco; U Francke
Journal:  Am J Hum Genet       Date:  2000-01       Impact factor: 11.025

4.  Evidence for widespread reticulate evolution within human duplicons.

Authors:  Michael S Jackson; Karen Oliver; Jane Loveland; Sean Humphray; Ian Dunham; Mariano Rocchi; Luigi Viggiano; Jonathan P Park; Matthew E Hurles; Mauro Santibanez-Koref
Journal:  Am J Hum Genet       Date:  2005-09-30       Impact factor: 11.025

5.  Evolutionary mechanisms shaping the genomic structure of the Williams-Beuren syndrome chromosomal region at human 7q11.23.

Authors:  Anna Antonell; Oscar de Luis; Xavier Domingo-Roura; Luis Alberto Pérez-Jurado
Journal:  Genome Res       Date:  2005-09       Impact factor: 9.043

6.  Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs.

Authors:  Sung-Sup Park; Paweł Stankiewicz; Weimin Bi; Christine Shaw; Jessica Lehoczky; Ken Dewar; Bruce Birren; James R Lupski
Journal:  Genome Res       Date:  2002-05       Impact factor: 9.043

7.  A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications.

Authors:  Xinwei She; Ge Liu; Mario Ventura; Shaying Zhao; Doriana Misceo; Roberta Roberto; Maria Francesca Cardone; Mariano Rocchi; Eric D Green; Nicoletta Archidiacano; Evan E Eichler
Journal:  Genome Res       Date:  2006-04-10       Impact factor: 9.043

Review 8.  Mechanisms and treatment of cardiovascular disease in Williams-Beuren syndrome.

Authors:  Barbara R Pober; Mark Johnson; Zsolt Urban
Journal:  J Clin Invest       Date:  2008-05       Impact factor: 14.808

9.  GTF2IRD2 is located in the Williams-Beuren syndrome critical region 7q11.23 and encodes a protein with two TFII-I-like helix-loop-helix repeats.

Authors:  Aleksandr V Makeyev; Lkhamsuren Erdenechimeg; Ognoon Mungunsukh; Jutta J Roth; Badam Enkhmandakh; Frank H Ruddle; Dashzeveg Bayarsaihan
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-08       Impact factor: 11.205

10.  Williams-Beuren syndrome TRIM50 encodes an E3 ubiquitin ligase.

Authors:  Lucia Micale; Carmela Fusco; Bartolomeo Augello; Luisa M R Napolitano; Emmanouil T Dermitzakis; Germana Meroni; Giuseppe Merla; Alexandre Reymond
Journal:  Eur J Hum Genet       Date:  2008-04-09       Impact factor: 4.246

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