Literature DB >> 10318895

Exon repetition in mRNA.

S A Frantz1, A S Thiara, D Lodwick, L L Ng, I C Eperon, N J Samani.   

Abstract

The production of different transcripts (transcript heterogeneity) is a feature of many genes that may result in phenotypic variation. Several mechanisms, that occur at both the DNA and RNA level have been shown to contribute to this transcript heterogeneity in mammals, all of which involve either the rearrangement of sequences within a genome or the use of alternative signals in linear, contiguous DNA or RNA. Here we describe tissue-specific repetition of selective exons in transcripts of a rat gene (SA) with a normal exon-intron organization. We conclude that nonlinear mRNA processing can generate tissue-specific transcripts.

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Year:  1999        PMID: 10318895      PMCID: PMC21871          DOI: 10.1073/pnas.96.10.5400

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

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Journal:  Nature       Date:  1992-12-17       Impact factor: 49.962

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Authors:  J M Nigro; K R Cho; E R Fearon; S E Kern; J M Ruppert; J D Oliner; K W Kinzler; B Vogelstein
Journal:  Cell       Date:  1991-02-08       Impact factor: 41.582

3.  Cloning and functional expression of rNBC, an electrogenic Na(+)-HCO3- cotransporter from rat kidney.

Authors:  M F Romero; P Fong; U V Berger; M A Hediger; W F Boron
Journal:  Am J Physiol       Date:  1998-02

4.  Trans splicing of mRNA precursors in vitro.

Authors:  M M Konarska; R A Padgett; P A Sharp
Journal:  Cell       Date:  1985-08       Impact factor: 41.582

5.  Increased expression of the SA gene in the kidney of the spontaneously hypertensive rat is localized to the proximal tubule.

Authors:  H R Patel; A S Thiara; K P West; D Lodwick; N J Samani
Journal:  J Hypertens       Date:  1994-12       Impact factor: 4.844

6.  Natural trans-splicing in carnitine octanoyltransferase pre-mRNAs in rat liver.

Authors:  C Caudevilla; D Serra; A Miliar; C Codony; G Asins; M Bach; F G Hegardt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

7.  Cotranscription and intergenic splicing of human galactose-1-phosphate uridylyltransferase and interleukin-11 receptor alpha-chain genes generate a fusion mRNA in normal cells. Implication for the production of multidomain proteins during evolution.

Authors:  F Magrangeas; G Pitiot; S Dubois; E Bragado-Nilsson; M Chérel; S Jobert; B Lebeau; O Boisteau; B Lethé; J Mallet; Y Jacques; S Minvielle
Journal:  J Biol Chem       Date:  1998-06-26       Impact factor: 5.157

8.  Human SA gene locus as a candidate locus for essential hypertension.

Authors:  N Iwai; N Ohmichi; K Hanai; Y Nakamura; M Kinoshita
Journal:  Hypertension       Date:  1994-03       Impact factor: 10.190

9.  SA gene expression in the proximal tubule of normotensive and hypertensive rats.

Authors:  T Yang; S A Hassan; I Singh; A Smart; F C Brosius; L B Holzman; J B Schnermann; J P Briggs
Journal:  Hypertension       Date:  1996-03       Impact factor: 10.190

10.  SA gene and blood pressure cosegregation using Dahl salt-sensitive rats.

Authors:  E L Harris; H Dene; J P Rapp
Journal:  Am J Hypertens       Date:  1993-04       Impact factor: 2.689

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  19 in total

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2.  Alternative trans-splicing of constant and variable exons of a Drosophila axon guidance gene, lola.

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Journal:  Genes Dev       Date:  2003-10-01       Impact factor: 11.361

3.  Exon repetition: a major pathway for processing mRNA of some genes is allele-specific.

Authors:  Roberto Rigatti; Jian-Hua Jia; Nilesh J Samani; Ian C Eperon
Journal:  Nucleic Acids Res       Date:  2004-01-22       Impact factor: 16.971

4.  Molecular mechanisms governing Pcdh-gamma gene expression: evidence for a multiple promoter and cis-alternative splicing model.

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Journal:  Genes Dev       Date:  2002-08-01       Impact factor: 11.361

Review 5.  Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression.

Authors:  Zhi-Ming Zheng
Journal:  J Biomed Sci       Date:  2004 May-Jun       Impact factor: 8.410

6.  Short homologous sequences are strongly associated with the generation of chimeric RNAs in eukaryotes.

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Journal:  J Mol Evol       Date:  2008-12-17       Impact factor: 2.395

7.  Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line.

Authors:  Qi Zhao; Otavia L Caballero; Samuel Levy; Brian J Stevenson; Christian Iseli; Sandro J de Souza; Pedro A Galante; Dana Busam; Margaret A Leversha; Kalyani Chadalavada; Yu-Hui Rogers; J Craig Venter; Andrew J G Simpson; Robert L Strausberg
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-30       Impact factor: 11.205

8.  Post-transcriptional exon shuffling events in humans can be evolutionarily conserved and abundant.

Authors:  Haya H Al-Balool; David Weber; Yilei Liu; Mark Wade; Kamlesh Guleria; Pitsien Lang Ping Nam; Jake Clayton; William Rowe; Jonathan Coxhead; Julie Irving; David J Elliott; Andrew G Hall; Mauro Santibanez-Koref; Michael S Jackson
Journal:  Genome Res       Date:  2011-09-23       Impact factor: 9.043

9.  Localization of an exonic splicing enhancer responsible for mammalian natural trans-splicing.

Authors:  C Caudevilla; C Codony; D Serra; G Plasencia; R Román; A Graessmann; G Asins; M Bach-Elias; F G Hegardt
Journal:  Nucleic Acids Res       Date:  2001-07-15       Impact factor: 16.971

10.  Detecting and characterizing circular RNAs.

Authors:  William R Jeck; Norman E Sharpless
Journal:  Nat Biotechnol       Date:  2014-05       Impact factor: 54.908

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