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Literature DB >> 10233986

Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons.

Abstract

A phylogenetic analysis of the Ty3/Gypsy group of retrotransposons identified a conserved domain (GPY/F) present in the integrases of several members of this group as well as of certain vertebrate retroviruses. The analysis suggested an evolutionary scheme for the acquisition and loss of the GPY/F domain as well as the acquisition of a chromodomain module in the integrase encoded by this group of elements that may direct targeting specificity in the host genome.

Mesh：

Substances：
Retroelements
Integrases

Year: 1999 PMID： 10233986 PMCID： PMC112568

Source DB: PubMed Journal: J Virol ISSN： 0022-538X Impact factor: 5.103

29 in total

1. A map of interactions between the proteins of a retrotransposon.

Authors: S J Steele; H L Levin
Journal: J Virol Date: 1998-11 Impact factor: 5.103

2. Mutations in nonconserved domains of Ty3 integrase affect multiple stages of the Ty3 life cycle.

Authors: M H Nymark-McMahon; S B Sandmeyer
Journal: J Virol Date: 1999-01 Impact factor: 5.103

3. A chimeric Ty3/Moloney murine leukemia virus integrase protein is active in vivo.

Authors: S L Dildine; J Respess; D Jolly; S B Sandmeyer
Journal: J Virol Date: 1998-05 Impact factor: 5.103

4. Structure of the chromatin binding (chromo) domain from mouse modifier protein 1.

Authors: L J Ball; N V Murzina; R W Broadhurst; A R Raine; S J Archer; F J Stott; A G Murzin; P B Singh; P J Domaille; E D Laue
Journal: EMBO J Date: 1997-05-01 Impact factor: 11.598

5. The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors: N Saitou; M Nei
Journal: Mol Biol Evol Date: 1987-07 Impact factor: 16.240

6. Selfish genes, the phenotype paradigm and genome evolution.

Authors: W F Doolittle; C Sapienza
Journal: Nature Date: 1980-04-17 Impact factor: 49.962

7. Selfish DNA: the ultimate parasite.

Authors: L E Orgel; F H Crick
Journal: Nature Date: 1980-04-17 Impact factor: 49.962

8. A hotspot for the Drosophila gypsy retroelement in the ovo locus.

Authors: K J Dej; T Gerasimova; V G Corces; J D Boeke
Journal: Nucleic Acids Res Date: 1998-09-01 Impact factor: 16.971

9. Potential retroviruses in plants: Tat1 is related to a group of Arabidopsis thaliana Ty3/gypsy retrotransposons that encode envelope-like proteins.

Authors: D A Wright; D F Voytas
Journal: Genetics Date: 1998-06 Impact factor: 4.562

10. Origin and evolution of retroelements based upon their reverse transcriptase sequences.

Authors: Y Xiong; T H Eickbush
Journal: EMBO J Date: 1990-10 Impact factor: 11.598

102 in total

1. Transposable elements in sexual and ancient asexual taxa.

Authors: I Arkhipova; M Meselson
Journal: Proc Natl Acad Sci U S A Date: 2000-12-19 Impact factor: 11.205

2. Integrase mediates nuclear localization of Ty3.

Authors: S S Lin; M H Nymark-McMahon; L Yieh; S B Sandmeyer
Journal: Mol Cell Biol Date: 2001-11 Impact factor: 4.272

3. R2 retrotransposition on assembled nucleosomes depends on the translational position of the target site.

Authors: Junqiang Ye; Zungyoon Yang; Jeffrey J Hayes; Thomas H Eickbush
Journal: EMBO J Date: 2002-12-16 Impact factor: 11.598

4. Fission yeast retrotransposon Tf1 integration is targeted to 5' ends of open reading frames.

Authors: R Behrens; J Hayles; P Nurse
Journal: Nucleic Acids Res Date: 2000-12-01 Impact factor: 16.971

5. Distribution of retroelements in centromeres and neocentromeres of maize.

Authors: Rebecca J Mroczek; R Kelly Dawe
Journal: Genetics Date: 2003-10 Impact factor: 4.562

Review 6. Integration by design.

Authors: Suzanne Sandmeyer
Journal: Proc Natl Acad Sci U S A Date: 2003-05-05 Impact factor: 11.205

7. In vitro targeting of strand transfer by the Ty3 retroelement integrase.

Authors: Xiaojie Qi; Suzanne Sandmeyer
Journal: J Biol Chem Date: 2012-04-04 Impact factor: 5.157

8. The removal of RNA primers from DNA synthesized by the reverse transcriptase of the retrotransposon Tf1 is stimulated by Tf1 integrase.

Authors: Eytan Herzig; Nickolay Voronin; Amnon Hizi
Journal: J Virol Date: 2012-04-04 Impact factor: 5.103

9. The C-module-binding factor supports amplification of TRE5-A retrotransposons in the Dictyostelium discoideum genome.

Authors: Annika Bilzer; Heike Dölz; Alexander Reinhardt; Anika Schmith; Oliver Siol; Thomas Winckler
Journal: Eukaryot Cell Date: 2010-11-12

10. Pyret, a Ty3/Gypsy retrotransposon in Magnaporthe grisea contains an extra domain between the nucleocapsid and protease domains.

Authors: H Nakayashiki; H Matsuo; I Chuma; K Ikeda; S Betsuyaku; M Kusaba; Y Tosa; S Mayama
Journal: Nucleic Acids Res Date: 2001-10-15 Impact factor: 16.971