Literature DB >> 10210188

On the role of the cis-proline residue in the active site of DsbA.

J B Charbonnier1, P Belin, M Moutiez, E A Stura, E Quéméneur.   

Abstract

In addition to the Cys-Xaa-Xaa-Cys motif at position 30-33, DsbA, the essential catalyst for disulfide bond formation in the bacterial periplasm shares with other oxidoreductases of the thioredoxin family a cis-proline in proximity of the active site residues. In the variant DsbA(P151A), this residue has been changed to an alanine, an almost isosteric residue which is not disposed to adopt the cis conformation. The substitution strongly destabilized the structure of DsbA, as determined by the decrease in the free energy of folding. The pKa of the thiol of Cys30 was only marginally decreased. Although in vivo the variant appeared to be correctly oxidized, it exhibited an activity less than half that of the wild-type enzyme with respect to the folding of alkaline phosphatase, used as a reporter of the disulfide bond formation in the periplasm. DsbA(P151A) crystallized in a different crystal form from the wild-type protein, in space group P2(1) with six molecules in the asymmetric unit. Its X-ray structure was determined to 2.8 A resolution. The most significant conformational changes occurred at the active site. The loop 149-152 adopted a new backbone conformation with Ala151 in a trans conformation. This rearrangement resulted in the loss of van der Waals interactions between this loop and the disulfide bond. His32 from the Cys-Xaa-Xaa-Cys sequence presented in four out of six molecules in the asymmetric unit a gauche conformation not observed in the wild-type protein. The X-ray structure and folding studies on DsbA(P151A) were consistent with the cis-proline playing a major role in the stabilization of the protein. A role for the positioning of the substrate is discussed. These important properties for the enzyme function might explain the conservation of this residue in DsbA and related proteins possessing the thioredoxin fold.

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Year:  1999        PMID: 10210188      PMCID: PMC2144099          DOI: 10.1110/ps.8.1.96

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  28 in total

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Authors:  E Pradel; P L Boquet
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2.  [A second gene involved in the formation of disulfide bonds in proteins localized in Escherichia coli periplasmic space].

Authors:  P Belin; P L Boquet
Journal:  C R Acad Sci III       Date:  1993

3.  Crystal structure of the DsbA protein required for disulphide bond formation in vivo.

Authors:  J L Martin; J C Bardwell; J Kuriyan
Journal:  Nature       Date:  1993-09-30       Impact factor: 49.962

4.  Redox properties of protein disulfide isomerase (DsbA) from Escherichia coli.

Authors:  M Wunderlich; R Glockshuber
Journal:  Protein Sci       Date:  1993-05       Impact factor: 6.725

5.  The Escherichia coli dsbA gene is partly transcribed from the promoter of a weakly expressed upstream gene.

Authors:  P Belin; P L Boquet
Journal:  Microbiology       Date:  1994-12       Impact factor: 2.777

6.  Replacement of proline-76 with alanine eliminates the slowest kinetic phase in thioredoxin folding.

Authors:  R F Kelley; F M Richards
Journal:  Biochemistry       Date:  1987-10-20       Impact factor: 3.162

7.  Reactivity and ionization of the active site cysteine residues of DsbA, a protein required for disulfide bond formation in vivo.

Authors:  J W Nelson; T E Creighton
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

8.  The reactive and destabilizing disulfide bond of DsbA, a protein required for protein disulfide bond formation in vivo.

Authors:  A Zapun; J C Bardwell; T E Creighton
Journal:  Biochemistry       Date:  1993-05-18       Impact factor: 3.162

9.  The redox properties of protein disulfide isomerase (DsbA) of Escherichia coli result from a tense conformation of its oxidized form.

Authors:  M Wunderlich; R Jaenicke; R Glockshuber
Journal:  J Mol Biol       Date:  1993-10-20       Impact factor: 5.469

Review 10.  Thioredoxin--a fold for all reasons.

Authors:  J L Martin
Journal:  Structure       Date:  1995-03-15       Impact factor: 5.006

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  23 in total

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Authors:  Melissa A Edeling; Umesh Ahuja; Begoña Heras; Linda Thöny-Meyer; Jennifer L Martin
Journal:  J Bacteriol       Date:  2004-06       Impact factor: 3.490

2.  Prediction of pKa and redox properties in the thioredoxin superfamily.

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Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

3.  F-like type IV secretion systems encode proteins with thioredoxin folds that are putative DsbC homologues.

Authors:  Trevor C Elton; Samantha J Holland; Laura S Frost; Bart Hazes
Journal:  J Bacteriol       Date:  2005-12       Impact factor: 3.490

4.  The multidrug resistance IncA/C transferable plasmid encodes a novel domain-swapped dimeric protein-disulfide isomerase.

Authors:  Lakshmanane Premkumar; Fabian Kurth; Simon Neyer; Mark A Schembri; Jennifer L Martin
Journal:  J Biol Chem       Date:  2013-12-05       Impact factor: 5.157

5.  Functional similarities of a thermostable protein-disulfide oxidoreductase identified in the archaeon Pyrococcus horikoshii to bacterial DsbA enzymes.

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Journal:  Extremophiles       Date:  2006-08-08       Impact factor: 2.395

6.  The role of an evolutionarily conserved cis-proline in the thioredoxin-like domain of human class Alpha glutathione transferase A1-1.

Authors:  Chris Nathaniel; Louise A Wallace; Jonathan Burke; Heini W Dirr
Journal:  Biochem J       Date:  2003-05-15       Impact factor: 3.857

7.  Crystal structure of the human ubiquitin-activating enzyme 5 (UBA5) bound to ATP: mechanistic insights into a minimalistic E1 enzyme.

Authors:  John-Paul Bacik; John R Walker; Mohsin Ali; Aaron D Schimmer; Sirano Dhe-Paganon
Journal:  J Biol Chem       Date:  2010-04-05       Impact factor: 5.157

8.  The structure of the first representative of Pfam family PF06475 reveals a new fold with possible involvement in glycolipid metabolism.

Authors:  Constantina Bakolitsa; Abhinav Kumar; Daniel McMullan; S Sri Krishna; Mitchell D Miller; Dennis Carlton; Rafael Najmanovich; Polat Abdubek; Tamara Astakhova; Hsiu Ju Chiu; Thomas Clayton; Marc C Deller; Lian Duan; Ylva Elias; Julie Feuerhelm; Joanna C Grant; Slawomir K Grzechnik; Gye Won Han; Lukasz Jaroszewski; Kevin K Jin; Heath E Klock; Mark W Knuth; Piotr Kozbial; David Marciano; Andrew T Morse; Edward Nigoghossian; Linda Okach; Silvya Oommachen; Jessica Paulsen; Ron Reyes; Christopher L Rife; Christina V Trout; Henry van den Bedem; Dana Weekes; Aprilfawn White; Qingping Xu; Keith O Hodgson; John Wooley; Marc André Elsliger; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-10-27

9.  Properties of the thioredoxin fold superfamily are modulated by a single amino acid residue.

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Journal:  J Biol Chem       Date:  2009-01-30       Impact factor: 5.157

10.  Crystal structure and biophysical properties of Bacillus subtilis BdbD. An oxidizing thiol:disulfide oxidoreductase containing a novel metal site.

Authors:  Allister Crow; Allison Lewin; Oliver Hecht; Mirja Carlsson Möller; Geoffrey R Moore; Lars Hederstedt; Nick E Le Brun
Journal:  J Biol Chem       Date:  2009-06-17       Impact factor: 5.157

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