Literature DB >> 3322388

Replacement of proline-76 with alanine eliminates the slowest kinetic phase in thioredoxin folding.

R F Kelley1, F M Richards.   

Abstract

The conformational transition observed upon addition of guanidine hydrochloride (Gdn-HCl) to solutions of oxidized Escherichia coli thioredoxin is dominated by a slow kinetic phase (time constant tau 1 = 300-800 s) that has features appropriate to a proline peptide isomerization. This observation has been interpreted as reflecting a folding pathway involving an obligatory isomerization of the imide peptide bond between isoleucine-75 and proline-76 [Kelley, R. F., & Stellwagen, E. (1984) Biochemistry 23, 5095-5102]; this peptide bond is known to have the cis configuration in the folded state [Eklund, H., Cambillan, C., Sjöberg, B.-M., Holmgren, A., Jörnvall, H., Höög, J.-O., & Brändén, C.-I. (1984) EMBO J. 3, 1443-1449]. We have tested this hypothesis by examining the conformational transitions of two thioredoxin mutants, trxA76 having an alanine substituted for proline-76 and trxA2 [Russel, M., & Model, P. (1983) J. Bacteriol. 154, 1064-1070] having proline-34 replaced with serine. Both mutant proteins display far-ultraviolet circular dichroic spectra similar to that of native wild-type thioredoxin. The tryptophan fluorescence emission of native trxA2 is equivalent to that of wild-type thioredoxin, while the emission intensity of native trxA76 at 350 nm is 2-fold greater. Tryptophan fluorescence and peptide ellipticity measurements indicate that the mutant proteins undergo two-state and reversible equilibrium unfolding transitions upon addition of guanidine hydrochloride (Gdn-HCl). These transitions are centered at 2.4 and 1.5 M Gdn-HCl for trxA2 and trxA76, respectively, as compared to a midpoint of 2.5 M denaturant for wild-type thioredoxin. As observed for wild-type thioredoxin, fluorescence measurements reveal monophasic unfolding kinetics for trxA2 at a variety of final denaturant concentrations. The tau for unfolding varies monotonically from 210 s in 2.4 M Gdn-HCl to 7 s for a final Gdn-HCl concentration of 3.5 M. Refolding of denatured trxA2 in 1.5 M Gdn-HCl detected by fluorescence measurements is described by three kinetic phases with time constants and fractional amplitudes (alpha) similar to those of wild-type thioredoxins. The fractional amplitude (alpha 1) of the slowest of these phases, tau 1 = 430 +/- 38 s in 2.0 M Gdn-HCl, decreases with final Gdn-HCl concentration. Multimixing experiments suggest that this phase results from an equilibration between denatured forms and has a tau of 34 s in 4 M denaturant, features previously observed for the wild-type protein.(ABSTRACT TRUNCATED AT 400 WORDS)

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Year:  1987        PMID: 3322388     DOI: 10.1021/bi00395a028

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  28 in total

1.  NMR analysis of cleaved Escherichia coli thioredoxin (1-73/74-108) and its P76A variant: cis/trans peptide isomerization.

Authors:  W F Yu; C S Tung; H Wang; M L Tasayco
Journal:  Protein Sci       Date:  2000-01       Impact factor: 6.725

Review 2.  Protein folding.

Authors:  T E Creighton
Journal:  Biochem J       Date:  1990-08-15       Impact factor: 3.857

3.  A selection for mutants that interfere with folding of Escherichia coli thioredoxin-1 in vivo.

Authors:  Damon Huber; Myoung-Il Cha; Laurent Debarbieux; Anne-Gaëlle Planson; Nelly Cruz; Gary López; María Luisa Tasayco; Alain Chaffotte; Jon Beckwith
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-15       Impact factor: 11.205

4.  Elucidating quantitative stability/flexibility relationships within thioredoxin and its fragments using a distance constraint model.

Authors:  Donald J Jacobs; Dennis R Livesay; Jeremy Hules; Maria Luisa Tasayco
Journal:  J Mol Biol       Date:  2006-02-24       Impact factor: 5.469

5.  Cis proline mutants of ribonuclease A. II. Elimination of the slow-folding forms by mutation.

Authors:  D A Schultz; F X Schmid; R L Baldwin
Journal:  Protein Sci       Date:  1992-07       Impact factor: 6.725

6.  Solvent Effects on the Energetics of Prolyl Peptide Bond Isomerization.

Authors:  Eric S Eberhardt; Stewart N Loh; Andrew P Hinck; Ronald T Raines
Journal:  J Am Chem Soc       Date:  1992       Impact factor: 15.419

Review 7.  Toward a better understanding of protein folding pathways.

Authors:  T E Creighton
Journal:  Proc Natl Acad Sci U S A       Date:  1988-07       Impact factor: 11.205

8.  The role of an evolutionarily conserved cis-proline in the thioredoxin-like domain of human class Alpha glutathione transferase A1-1.

Authors:  Chris Nathaniel; Louise A Wallace; Jonathan Burke; Heini W Dirr
Journal:  Biochem J       Date:  2003-05-15       Impact factor: 3.857

9.  A pleîotropic acid phosphatase-deficient mutant of Escherichia coli shows premature termination in the dsbA gene. Use of dsbA::phoA fusions to localize a structurally important domain in DsbA.

Authors:  P Belin; E Quéméneur; P L Boquet
Journal:  Mol Gen Genet       Date:  1994-01

10.  The conserved cis-Pro39 residue plays a crucial role in the proper positioning of the catalytic base Asp38 in ketosteroid isomerase from Comamonas testosteroni.

Authors:  Gyu Hyun Nam; Sun-Shin Cha; Young Sung Yun; Yun Hee Oh; Bee Hak Hong; Heung-Soo Lee; Kwan Yong Choi
Journal:  Biochem J       Date:  2003-10-15       Impact factor: 3.857

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