Literature DB >> 10200291

Identification by UV resonance Raman spectroscopy of an imino tautomer of 5-hydroxy-2'-deoxycytidine, a powerful base analog transition mutagen with a much higher unfavored tautomer frequency than that of the natural residue 2'-deoxycytidine.

W Suen1, T G Spiro, L C Sowers, J R Fresco.   

Abstract

UV resonance Raman spectroscopy was used to detect and estimate the frequency of the unfavored imino tautomer of the transition mutagen 5-hydroxy-2'-deoxycytidine (HO5dCyt) in its anionic form. In DNA, this 2'-deoxycytidine analog arises from the oxidation of 2'-deoxycytidine and induces C --> T transitions with 10(2) greater frequency than such spontaneous transitions. An imino tautomer marker carbonyl band (approximately 1650 cm-1) is enhanced at approximately 65 degrees C against an otherwise stable spectrum of bands associated with the favored amino tautomer. This band is similarly present in the UV resonance Raman spectra of the imino cytidine analogs N3-methylcytidine at high pH and N4-methoxy-2'-deoxycytidine at pH 7 and displays features attributable to the imino form of C residues and their derivatives. The fact that the imino tautomer of HO5dCyt occurs at a frequency consistent with its high mutagenic enhancement lends strong support to the hypothesis that unfavored base tautomers play important roles in the mispair intermediates of replication leading to substitution mutations.

Entities:  

Mesh:

Substances:

Year:  1999        PMID: 10200291      PMCID: PMC16361          DOI: 10.1073/pnas.96.8.4500

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

Review 1.  Fidelity mechanisms in DNA replication.

Authors:  H Echols; M F Goodman
Journal:  Annu Rev Biochem       Date:  1991       Impact factor: 23.643

Review 2.  Origins of spontaneous base substitutions.

Authors:  R C von Borstel
Journal:  Mutat Res       Date:  1994-05-01       Impact factor: 2.433

3.  Base pairing and fidelity in codon-anticodon interaction.

Authors:  M D Topal; J R Fresco
Journal:  Nature       Date:  1976-09-23       Impact factor: 49.962

4.  Base-pair induced shifts in the tautomeric equilibrium of a modified DNA base.

Authors:  G V Fazakerley; Z Gdaniec; L C Sowers
Journal:  J Mol Biol       Date:  1993-03-05       Impact factor: 5.469

Review 5.  Base mismatches and mutagenesis: how important is tautomerism?

Authors:  A R Morgan
Journal:  Trends Biochem Sci       Date:  1993-05       Impact factor: 13.807

6.  A proposed mechanism for the mutagenicity of 5-formyluracil.

Authors:  E J Privat; L C Sowers
Journal:  Mutat Res       Date:  1996-07-22       Impact factor: 2.433

7.  Methoxyamine-induced mutagenesis of nucleic acids. A proton NMR study of oligonucleotides containing N4-methoxycytosine paired with adenine or guanine.

Authors:  Z Gdaniec; B Ban; L C Sowers; G V Fazakerley
Journal:  Eur J Biochem       Date:  1996-12-01

8.  Mechanism of hydroxylamine mutagenesis. Crystal structure and conformation of 1,5-dimethyl-N4-hydroxycytosine.

Authors:  D Shugar; C P Huber; G I Birnbaum
Journal:  Biochim Biophys Acta       Date:  1976-10-18

9.  Mutation spectrum of copper-induced DNA damage.

Authors:  L K Tkeshelashvili; T McBride; K Spence; L A Loeb
Journal:  J Biol Chem       Date:  1991-04-05       Impact factor: 5.157

10.  Reverse chemical mutagenesis: identification of the mutagenic lesions resulting from reactive oxygen species-mediated damage to DNA.

Authors:  D I Feig; L C Sowers; L A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  1994-07-05       Impact factor: 11.205

View more
  20 in total

1.  Unlocking hidden genomic sequence.

Authors:  Jonathan M Keith; Duncan A E Cochran; Gita H Lala; Peter Adams; Darryn Bryant; Keith R Mitchelson
Journal:  Nucleic Acids Res       Date:  2004-02-18       Impact factor: 16.971

2.  Impact of base analogues within a CpG dinucleotide on the binding of DNA by the methyl-binding domain of MeCP2 and methylation by DNMT1.

Authors:  Victoria Valinluck Lao; Agus Darwanto; Lawrence C Sowers
Journal:  Biochemistry       Date:  2010-11-09       Impact factor: 3.162

3.  Tautomerism provides a molecular explanation for the mutagenic properties of the anti-HIV nucleoside 5-aza-5,6-dihydro-2'-deoxycytidine.

Authors:  Deyu Li; Bogdan I Fedeles; Vipender Singh; Chunte Sam Peng; Katherine J Silvestre; Allison K Simi; Jeffrey H Simpson; Andrei Tokmakoff; John M Essigmann
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-28       Impact factor: 11.205

4.  Environmental Effects on Guanine-Thymine Mispair Tautomerization Explored with Quantum Mechanical/Molecular Mechanical Free Energy Simulations.

Authors:  Pengfei Li; Atul Rangadurai; Hashim M Al-Hashimi; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2020-06-11       Impact factor: 15.419

5.  Molecular Basis of Substrate Recognition of Endonuclease Q from the Euryarchaeon Pyrococcus furiosus.

Authors:  Miyako Shiraishi; Shigenori Iwai
Journal:  J Bacteriol       Date:  2020-01-02       Impact factor: 3.490

6.  Synthesis and antiviral activity of 5-substituted cytidine analogues: identification of a potent inhibitor of viral RNA-dependent RNA polymerases.

Authors:  Daniel A Harki; Jason D Graci; Jessica E Galarraga; William J Chain; Craig E Cameron; Blake R Peterson
Journal:  J Med Chem       Date:  2006-10-19       Impact factor: 7.446

7.  Two-dimensional IR spectroscopy of the anti-HIV agent KP1212 reveals protonated and neutral tautomers that influence pH-dependent mutagenicity.

Authors:  Chunte Sam Peng; Bogdan I Fedeles; Vipender Singh; Deyu Li; Tiffany Amariuta; John M Essigmann; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

8.  Thermodynamic signature of DNA damage: characterization of DNA with a 5-hydroxy-2'-deoxycytidine·2'-deoxyguanosine base pair.

Authors:  Manjori Ganguly; Marta W Szulik; Patrick S Donahue; Kate Clancy; Michael P Stone; Barry Gold
Journal:  Biochemistry       Date:  2012-02-24       Impact factor: 3.162

9.  Direct observation of ground-state lactam-lactim tautomerization using temperature-jump transient 2D IR spectroscopy.

Authors:  Chunte Sam Peng; Carlos R Baiz; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

10.  Ambivalent incorporation of the fluorescent cytosine analogues tC and tCo by human DNA polymerase alpha and Klenow fragment.

Authors:  Gudrun Stengel; Byron W Purse; L Marcus Wilhelmsson; Milan Urban; Robert D Kuchta
Journal:  Biochemistry       Date:  2009-08-11       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.