Literature DB >> 10192946

Three-dimensional quantitative structure-activity relationships from tuned molecular quantum similarity measures: prediction of the corticosteroid-binding globulin binding affinity for a steroid family.

D Robert1, L Amat, R Carbó-Dorca.   

Abstract

Predictive models based on tuned molecular quantum similarity measures and their application to obtain quantitative structure-activity relationships (QSAR) are described. In the present paper, the corticosteroid-binding globulin binding affinity of a 31 steroid family is studied by means of a multilinear regression using molecular descriptors derived from mixed steric-electrostatic quantum similarity matrixes as parameters, obtaining satisfactory predictions. A systematic procedure to treat outliers by using triple-density quantum similarity measures is also presented. This method depicts an alternative to the grid-based QSAR techniques, providing a consistent approach that avoids problematic result dependency on the grid parameters.

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Year:  1999        PMID: 10192946     DOI: 10.1021/ci980410v

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  11 in total

1.  Facet diagrams for quantum similarity data.

Authors:  D Robert; X Gironés; R Carbó-Dorca
Journal:  J Comput Aided Mol Des       Date:  1999-11       Impact factor: 3.686

2.  Antimalarial activity of synthetic 1,2,4-trioxanes and cyclic peroxy ketals, a quantum similarity study.

Authors:  X Gironés; A Gallegos; R Carbó-Dorca
Journal:  J Comput Aided Mol Des       Date:  2001-12       Impact factor: 3.686

3.  3D-chiral atom, atom-type, and total non-stochastic and stochastic molecular linear indices and their applications to central chirality codification.

Authors:  Yovani Marrero-Ponce; Juan A Castillo-Garit
Journal:  J Comput Aided Mol Des       Date:  2005-06       Impact factor: 3.686

4.  Analyzing the substitution effect on the CoMFA results within the framework of density functional theory (DFT).

Authors:  Alejandro Morales-Bayuelo
Journal:  J Mol Model       Date:  2016-06-21       Impact factor: 1.810

5.  Use of electron-electron repulsion energy as a molecular descriptor in QSAR and QSPR studies.

Authors:  X Gironés; L Amat; D Robert; R Carbó-Dorca
Journal:  J Comput Aided Mol Des       Date:  2000-07       Impact factor: 3.686

6.  Structure-toxicity relationships of polycyclic aromatic hydrocarbons using molecular quantum similarity.

Authors:  A Gallegos; D Robert; X Gironés; R Carbó-Dorca
Journal:  J Comput Aided Mol Des       Date:  2001-01       Impact factor: 3.686

7.  Quantitative structure-activity relationships from optimised ab initio bond lengths: steroid binding affinity and antibacterial activity of nitrofuran derivatives.

Authors:  P J Smith; P L A Popelier
Journal:  J Comput Aided Mol Des       Date:  2004-02       Impact factor: 3.686

8.  Ligand intramolecular motions in ligand-protein interaction: ALPHA, a novel dynamic descriptor and a QSAR study with extended steroid benchmark dataset.

Authors:  Kari Tuppurainen; Marja Viisas; Mikael Peräkylä; Reino Laatikainen
Journal:  J Comput Aided Mol Des       Date:  2004-03       Impact factor: 3.686

9.  Combining spatial and chemical information for clustering pharmacophores.

Authors:  Lingxiao Zhou; Renate Griffith; Bruno Gaeta
Journal:  BMC Bioinformatics       Date:  2014-12-08       Impact factor: 3.169

10.  BCL::EMAS--enantioselective molecular asymmetry descriptor for 3D-QSAR.

Authors:  Gregory Sliwoski; Edward W Lowe; Mariusz Butkiewicz; Jens Meiler
Journal:  Molecules       Date:  2012-08-20       Impact factor: 4.411

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