Literature DB >> 10094464

Evidence for an ancient chromosomal duplication in Arabidopsis thaliana by sequencing and analyzing a 400-kb contig at the APETALA2 locus on chromosome 4.

N Terryn1, L Heijnen, A De Keyser, M Van Asseldonck, R De Clercq, H Verbakel, J Gielen, M Zabeau, R Villarroel, T Jesse, P Neyt, R Hogers, H Van Den Daele, W Ardiles, C Schueller, K Mayer, P Déhais, S Rombauts, M Van Montagu, P Rouzé, P Vos.   

Abstract

As part of the European Scientists Sequencing Arabidopsis program, a contiguous region (396607 bp) located on chromosome 4 around the APETALA2 gene was sequenced. Analysis of the sequence and comparison to public databases predicts 103 genes in this area, which represents a gene density of one gene per 3.85 kb. Almost half of the genes show no significant homology to known database entries. In addition, the first 45 kb of the contig, which covers 11 genes, is similar to a region on chromosome 2, as far as coding sequences are concerned. This observation indicates that ancient duplications of large pieces of DNA have occurred in Arabidopsis.

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Year:  1999        PMID: 10094464     DOI: 10.1016/s0014-5793(99)00097-6

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  11 in total

1.  Extensive duplication and reshuffling in the Arabidopsis genome.

Authors:  G Blanc; A Barakat; R Guyot; R Cooke; M Delseny
Journal:  Plant Cell       Date:  2000-07       Impact factor: 11.277

Review 2.  Plant genome evolution: lessons from comparative genomics at the DNA level.

Authors:  Renate Schmidt
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

3.  Evidence that rice and other cereals are ancient aneuploids.

Authors:  Klaas Vandepoele; Cedric Simillion; Yves Van de Peer
Journal:  Plant Cell       Date:  2003-09       Impact factor: 11.277

4.  Organization and structural evolution of four multigene families in Arabidopsis thaliana: AtLCAD, AtLGT, AtMYST and AtHD-GL2.

Authors:  R Tavares; S Aubourg; A Lecharny; M Kreis
Journal:  Plant Mol Biol       Date:  2000-03       Impact factor: 4.076

5.  Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny.

Authors:  H M Ku; T Vision; J Liu; S D Tanksley
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

6.  The hidden duplication past of Arabidopsis thaliana.

Authors:  Cedric Simillion; Klaas Vandepoele; Marc C E Van Montagu; Marc Zabeau; Yves Van de Peer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-08       Impact factor: 11.205

7.  Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis.

Authors:  D Grant; P Cregan; R C Shoemaker
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

8.  Investigating ancient duplication events in the Arabidopsis genome.

Authors:  Jeroen Raes; Klaas Vandepoele; Cedric Simillion; Yvan Saeys; Yves Van de Peer
Journal:  J Struct Funct Genomics       Date:  2003

9.  Downy mildew resistance in Arabidopsis by mutation of HOMOSERINE KINASE.

Authors:  Mireille van Damme; Tieme Zeilmaker; Joyce Elberse; Annemiek Andel; Monique de Sain-van der Velden; Guido van den Ackerveken
Journal:  Plant Cell       Date:  2009-07-21       Impact factor: 11.277

10.  Analysis of the NRT2 nitrate transporter family in Arabidopsis. Structure and gene expression.

Authors:  Mathilde Orsel; Anne Krapp; Françoise Daniel-Vedele
Journal:  Plant Physiol       Date:  2002-06       Impact factor: 8.340

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