Literature DB >> 10093220

Evolution of microsatellites in the yeast Saccharomyces cerevisiae: role of length and number of repeated units.

T Pupko1, D Graur.   

Abstract

The observed and expected frequencies of occurrence of microsatellites in the yeast Saccharomyces cerevisiae were investigated. In all cases, the observed frequencies exceeded the expected ones. In contrast to predictions by Messier et al. (1996), there is no critical number of repeats beyond which the observed frequencies of microsatellites significantly exceed the frequencies expected in a random DNA sequence of the same size. Rather, the degree of deviation from expectation was found to be dependent on the length of the microsatellite. That is, a fourfold concatemeric repeat of 3 bp was found to deviate from expectation as much as three-fold concatemeric repeat of 4 bp. These findings suggest that microsatellites evolve through strand-slippage events, rather than recombination events. This, in turn, suggests that the chances of erroneous hybridizations leading to strand-slippage are length dependent.

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Mesh:

Year:  1999        PMID: 10093220     DOI: 10.1007/pl00006474

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  22 in total

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2.  Two distinct modes of microsatellite mutation processes: evidence from the complete genomic sequences of nine species.

Authors:  Daniel Dieringer; Christian Schlötterer
Journal:  Genome Res       Date:  2003-10       Impact factor: 9.043

3.  Distribution of microsatellites in the genome of Medicago truncatula: a resource of genetic markers that integrate genetic and physical maps.

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Journal:  Genetics       Date:  2006-02-19       Impact factor: 4.562

4.  Complex microsatellite dynamics in the myostatin gene within ruminants.

Authors:  Asa Tellgren-Roth; Grigory Kolesov; Ana M Sifuentes-Rincón; David A Liberles
Journal:  J Mol Evol       Date:  2008-03-05       Impact factor: 2.395

Review 5.  Mutational dynamics of microsatellites.

Authors:  Atul Bhargava; F F Fuentes
Journal:  Mol Biotechnol       Date:  2010-03       Impact factor: 2.695

6.  Cyanobacterial phylogenetic analysis based on phylogenomics approaches render evolutionary diversification and adaptation: an overview of representative orders.

Authors:  Ratna Prabha; Dhananjaya P Singh
Journal:  3 Biotech       Date:  2019-02-15       Impact factor: 2.406

7.  Selection against frameshift mutations limits microsatellite expansion in coding DNA.

Authors:  D Metzgar; J Bytof; C Wills
Journal:  Genome Res       Date:  2000-01       Impact factor: 9.043

8.  The expansion of amino-acid repeats is not associated to adaptive evolution in mammalian genes.

Authors:  Fernando Cruz; Julien Roux; Marc Robinson-Rechavi
Journal:  BMC Genomics       Date:  2009-12-18       Impact factor: 3.969

9.  What is a microsatellite: a computational and experimental definition based upon repeat mutational behavior at A/T and GT/AC repeats.

Authors:  Yogeshwar D Kelkar; Noelle Strubczewski; Suzanne E Hile; Francesca Chiaromonte; Kristin A Eckert; Kateryna D Makova
Journal:  Genome Biol Evol       Date:  2010-07-28       Impact factor: 3.416

10.  DNA slippage occurs at microsatellite loci without minimal threshold length in humans: a comparative genomic approach.

Authors:  Sébastien Leclercq; Eric Rivals; Philippe Jarne
Journal:  Genome Biol Evol       Date:  2010-07-12       Impact factor: 3.416

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