Literature DB >> 10072574

Analysis of the monomeric alphoid sequences in the pericentromeric region of human chromosome 7.

A de la Puente1, E Velasco, L A Pérez Jurado, C Hernández-Chico, F M van de Rijke, S W Scherer, A K Raap, J Cruces.   

Abstract

To further define the structure of the pericentromeric region of human chromosome 7, we have identified and characterized a YAC clone (YAC 311.H5) containing the D7S1480 locus, which maps to the short arm near the centromere of this chromosome, by linkage in CEPH families and radiation hybrid analysis. This YAC contains two new blocks of alphoid DNA (named Z5 and Z6). Both Z5 and Z6 show monomeric structures and a lack of higher-order repeats, and, therefore, belong to suprachromosomal family type 4 (M1). The orientation of the two blocks and the physical distances over the region were defined by pulsed-field gel electrophoresis (PFGE) and fluorescence in situ hybridization on chromatin fibers (FiberFISH). A YAC contig spanning the centromeric region has been developed by STS content.

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Year:  1998        PMID: 10072574     DOI: 10.1159/000015175

Source DB:  PubMed          Journal:  Cytogenet Cell Genet        ISSN: 0301-0171


  3 in total

1.  Consensus higher order repeats and frequency of string distributions in human genome.

Authors:  Vladimir Paar; Ivan Basar; Marija Rosandić; Matko Gluncić
Journal:  Curr Genomics       Date:  2007-04       Impact factor: 2.236

2.  Human chromosome 7: DNA sequence and biology.

Authors:  Stephen W Scherer; Joseph Cheung; Jeffrey R MacDonald; Lucy R Osborne; Kazuhiko Nakabayashi; Jo-Anne Herbrick; Andrew R Carson; Layla Parker-Katiraee; Jennifer Skaug; Razi Khaja; Junjun Zhang; Alexander K Hudek; Martin Li; May Haddad; Gavin E Duggan; Bridget A Fernandez; Emiko Kanematsu; Simone Gentles; Constantine C Christopoulos; Sanaa Choufani; Dorota Kwasnicka; Xiangqun H Zheng; Zhongwu Lai; Deborah Nusskern; Qing Zhang; Zhiping Gu; Fu Lu; Susan Zeesman; Malgorzata J Nowaczyk; Ikuko Teshima; David Chitayat; Cheryl Shuman; Rosanna Weksberg; Elaine H Zackai; Theresa A Grebe; Sarah R Cox; Susan J Kirkpatrick; Nazneen Rahman; Jan M Friedman; Henry H Q Heng; Pier Giuseppe Pelicci; Francesco Lo-Coco; Elena Belloni; Lisa G Shaffer; Barbara Pober; Cynthia C Morton; James F Gusella; Gail A P Bruns; Bruce R Korf; Bradley J Quade; Azra H Ligon; Heather Ferguson; Anne W Higgins; Natalia T Leach; Steven R Herrick; Emmanuelle Lemyre; Chantal G Farra; Hyung-Goo Kim; Anne M Summers; Karen W Gripp; Wendy Roberts; Peter Szatmari; Elizabeth J T Winsor; Karl-Heinz Grzeschik; Ahmed Teebi; Berge A Minassian; Juha Kere; Lluis Armengol; Miguel Angel Pujana; Xavier Estivill; Michael D Wilson; Ben F Koop; Sabrina Tosi; Gudrun E Moore; Andrew P Boright; Eitan Zlotorynski; Batsheva Kerem; Peter M Kroisel; Erwin Petek; David G Oscier; Sarah J Mould; Hartmut Döhner; Konstanze Döhner; Johanna M Rommens; John B Vincent; J Craig Venter; Peter W Li; Richard J Mural; Mark D Adams; Lap-Chee Tsui
Journal:  Science       Date:  2003-04-10       Impact factor: 47.728

3.  Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats.

Authors:  Vladimir Paar; Nenad Pavin; Ivan Basar; Marija Rosandić; Matko Gluncić; Nils Paar
Journal:  BMC Bioinformatics       Date:  2008-11-03       Impact factor: 3.169

  3 in total

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