Literature DB >> 10064712

Sulphate ions observed in the 2.12 A structure of a new crystal form of S. cerevisiae phosphoglycerate mutase provide insights into understanding the catalytic mechanism.

D J Rigden1, R A Walter, S E Phillips, L A Fothergill-Gilmore.   

Abstract

The structure of a new crystal form of Saccharomyces cerevisiae phosphoglycerate mutase has been solved and refined to 2.12 A with working and free R-factors of 19.7 and 22.9 %, respectively. Higher-resolution data and greater non-crystallographic symmetry have produced a more accurate protein structure than previously. Prominent among the differences from the previous structure is the presence of two sulphate ions within each active site cleft. The separation of the sulphates suggests that they may occupy the same sites as phospho groups of the bisphosphate ligands of the enzyme. Plausible binding modes for 2,3-bisphosphoglycerate and 1, 3-bisphosphoglycerate are thereby suggested. These results support previous conclusions from mutant studies, highlight interesting new targets for mutagenesis and suggest a possible mechanism of enzyme phosphorylation. Copyright 1998 Academic Press.

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Year:  1999        PMID: 10064712     DOI: 10.1006/jmbi.1999.2566

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  10 in total

1.  Structural and functional analysis of Rv3214 from Mycobacterium tuberculosis, a protein with conflicting functional annotations, leads to its characterization as a phosphatase.

Authors:  Harriet A Watkins; Edward N Baker
Journal:  J Bacteriol       Date:  2006-05       Impact factor: 3.490

2.  Energetic Coupling between Ligand Binding and Dimerization in Escherichia coli Phosphoglycerate Mutase.

Authors:  Nathan W Gardner; Lyman K Monroe; Daisuke Kihara; Chiwook Park
Journal:  Biochemistry       Date:  2016-03-10       Impact factor: 3.162

3.  Unliganded structure of human bisphosphoglycerate mutase reveals side-chain movements induced by ligand binding.

Authors:  A Patterson; N C Price; J Nairn
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-27

Review 4.  Carbohydrate metabolism in Archaea: current insights into unusual enzymes and pathways and their regulation.

Authors:  Christopher Bräsen; Dominik Esser; Bernadette Rauch; Bettina Siebers
Journal:  Microbiol Mol Biol Rev       Date:  2014-03       Impact factor: 11.056

5.  Purification, crystallization and preliminary X-ray crystallographic analysis of the archaeal phosphoglycerate mutase PH0037 from Pyrococcus horikoshii OT3.

Authors:  Neratur K Lokanath; Naoki Kunishima
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-07-25

6.  Discovery and analysis of cofactor-dependent phosphoglycerate mutase homologs as novel phosphoserine phosphatases in Hydrogenobacter thermophilus.

Authors:  Yoko Chiba; Kenro Oshima; Hiroyuki Arai; Masaharu Ishii; Yasuo Igarashi
Journal:  J Biol Chem       Date:  2012-02-15       Impact factor: 5.157

7.  A cofactor-dependent phosphoglycerate mutase homolog from Bacillus stearothermophilus is actually a broad specificity phosphatase.

Authors:  D J Rigden; I Bagyan; E Lamani; P Setlow; M J Jedrzejas
Journal:  Protein Sci       Date:  2001-09       Impact factor: 6.725

8.  Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis.

Authors:  Yoko Chiba; Shoichiro Horita; Jun Ohtsuka; Hiroyuki Arai; Koji Nagata; Yasuo Igarashi; Masaru Tanokura; Masaharu Ishii
Journal:  J Biol Chem       Date:  2013-03-11       Impact factor: 5.157

9.  Bisphosphoglycerate mutase controls serine pathway flux via 3-phosphoglycerate.

Authors:  Rob C Oslund; Xiaoyang Su; Michael Haugbro; Jung-Min Kee; Mark Esposito; Yael David; Boyuan Wang; Eva Ge; David H Perlman; Yibin Kang; Tom W Muir; Joshua D Rabinowitz
Journal:  Nat Chem Biol       Date:  2017-08-07       Impact factor: 15.040

10.  The Pivotal Role of Protein Phosphorylation in the Control of Yeast Central Metabolism.

Authors:  Panayotis Vlastaridis; Athanasios Papakyriakou; Anargyros Chaliotis; Efstratios Stratikos; Stephen G Oliver; Grigorios D Amoutzias
Journal:  G3 (Bethesda)       Date:  2017-04-03       Impact factor: 3.154

  10 in total

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