Literature DB >> 10051589

Stretching lattice models of protein folding.

N D Socci1, J N Onuchic, P G Wolynes.   

Abstract

A new class of experiments that probe folding of individual protein domains uses mechanical stretching to cause the transition. We show how stretching forces can be incorporated in lattice models of folding. For fast folding proteins, the analysis suggests a complex relation between the force dependence and the reaction coordinate for folding.

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Year:  1999        PMID： 10051589      PMCID： PMC26731          DOI： 10.1073/pnas.96.5.2031

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  12 in total

1.  Protein folding funnels: a kinetic approach to the sequence-structure relationship.

Authors:  P E Leopold; M Montal; J N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-15       Impact factor: 11.205

2.  Intermittency of single molecule reaction dynamics in fluctuating environments.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-05-22       Impact factor: 9.161

3.  Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding.

Authors:  S J Hagen; J Hofrichter; A Szabo; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

4.  Folding funnels and energy landscapes of larger proteins within the capillarity approximation.

Authors:  P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-10       Impact factor: 11.205

5.  Protein folding funnels: the nature of the transition state ensemble.

Authors:  J N Onuchic; N D Socci; Z Luthey-Schulten; P G Wolynes
Journal:  Fold Des       Date:  1996

6.  Reversible unfolding of individual titin immunoglobulin domains by AFM.

Authors:  M Rief; M Gautel; F Oesterhelt; J M Fernandez; H E Gaub
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

7.  Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold.

Authors:  A V Finkelstein
Journal:  Fold Des       Date:  1997

8.  Folding-unfolding transitions in single titin molecules characterized with laser tweezers.

Authors:  M S Kellermayer; S B Smith; H L Granzier; C Bustamante
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

9.  Toward an outline of the topography of a realistic protein-folding funnel.

Authors:  J N Onuchic; P G Wolynes; Z Luthey-Schulten; N D Socci
Journal:  Proc Natl Acad Sci U S A       Date:  1995-04-11       Impact factor: 11.205

10.  Elasticity and unfolding of single molecules of the giant muscle protein titin.

Authors:  L Tskhovrebova; J Trinick; J A Sleep; R M Simmons
Journal:  Nature       Date:  1997-05-15       Impact factor: 49.962
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  19 in total

1.  Mechanical unfolding of a beta-hairpin using molecular dynamics.

Authors:  Z Bryant; V S Pande; D S Rokhsar
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

2.  Native topology determines force-induced unfolding pathways in globular proteins.

Authors:  D K Klimov; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

3.  Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation.

Authors:  R B Best; B Li; A Steward; V Daggett; J Clarke
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

4.  Probing static disorder in Arrhenius kinetics by single-molecule force spectroscopy.

Authors:  Tzu-Ling Kuo; Sergi Garcia-Manyes; Jingyuan Li; Itay Barel; Hui Lu; Bruce J Berne; Michael Urbakh; Joseph Klafter; Julio M Fernández
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-08       Impact factor: 11.205

5.  Energy landscape distortions and the mechanical unfolding of proteins.

Authors:  Daniel J Lacks
Journal:  Biophys J       Date:  2005-02-24       Impact factor: 4.033

6.  Dissecting the mechanical unfolding of ubiquitin.

Authors:  Anders Irbäck; Simon Mitternacht; Sandipan Mohanty
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-07       Impact factor: 11.205

7.  Force unfolding single RNAs.

Authors:  Fei Liu; Huan Tong; Zhong-Can Ou-Yang
Journal:  Biophys J       Date:  2005-12-30       Impact factor: 4.033

8.  Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations.

Authors:  Kei-ichi Okazaki; Nobuyasu Koga; Shoji Takada; Jose N Onuchic; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-28       Impact factor: 11.205

9.  Numerical simulation of gel electrophoresis of DNA knots in weak and strong electric fields.

Authors:  C Weber; A Stasiak; P De Los Rios; G Dietler
Journal:  Biophys J       Date:  2006-02-10       Impact factor: 4.033

10.  Monte Carlo simulation of mechanical unfolding of proteins based on a simple two-state model.

Authors:  William T King; Meihong Su; Guoliang Yang
Journal:  Int J Biol Macromol       Date:  2009-12-23       Impact factor: 6.953
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