Literature DB >> 9965783

Monte Carlo simulations in generalized ensemble: Multicanonical algorithm versus simulated tempering.

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Abstract

Year:  1996        PMID： 9965783     DOI： 10.1103/physreve.54.5863

Source DB:  PubMed          Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics        ISSN： 1063-651X


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  12 in total

1.  Deciphering common failures in molecular docking of ligand-protein complexes.

Authors:  G M Verkhivker; D Bouzida; D K Gehlhaar; P A Rejto; S Arthurs; A B Colson; S T Freer; V Larson; B A Luty; T Marrone; P W Rose
Journal:  J Comput Aided Mol Des       Date:  2000-11       Impact factor: 3.686

2.  Configurational temperature density of states simulations of proteins.

Authors:  Nitin Rathore; Thomas A Knotts; Juan J de Pablo
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

3.  Generalized simulated tempering for exploring strong phase transitions.

Authors:  Jaegil Kim; John E Straub
Journal:  J Chem Phys       Date:  2010-10-21       Impact factor: 3.488

4.  Error and efficiency of simulated tempering simulations.

Authors:  Edina Rosta; Gerhard Hummer
Journal:  J Chem Phys       Date:  2010-01-21       Impact factor: 3.488

5.  Multicanonical Molecular Dynamics Simulations of the N-terminal Domain of Protein L9.

Authors:  Fatih Yaşar; Ping Jiang; Ulrich H E Hansmann
Journal:  Europhys Lett       Date:  2014-02-01       Impact factor: 1.947

6.  Parallel continuous simulated tempering and its applications in large-scale molecular simulations.

Authors:  Tianwu Zang; Linglin Yu; Chong Zhang; Jianpeng Ma
Journal:  J Chem Phys       Date:  2014-07-28       Impact factor: 3.488

7.  Folding and self-assembly of a small heterotetramer.

Authors:  Fatih Yaşar; Adam K Sieradzan; Ulrich H E Hansmann
Journal:  J Chem Phys       Date:  2014-03-14       Impact factor: 3.488

Review 8.  Equilibrium sampling in biomolecular simulations.

Authors:  Daniel M Zuckerman
Journal:  Annu Rev Biophys       Date:  2011       Impact factor: 12.981

9.  Computing Relative Free Energies of Solvation using Single Reference Thermodynamic Integration Augmented with Hamiltonian Replica Exchange.

Authors:  Ilja V Khavrutskii; Anders Wallqvist
Journal:  J Chem Theory Comput       Date:  2010-11-09       Impact factor: 6.006

10.  Folding and self-assembly of a small protein complex.

Authors:  Adam K Sieradzan; Adam Liwo; Ulrich H E Hansmann
Journal:  J Chem Theory Comput       Date:  2012-09-11       Impact factor: 6.006
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