Literature DB >> 9920387

6-Phosphogluconate dehydrogenase: the mechanism of action investigated by a comparison of the enzyme from different species.

M Rippa1, P P Giovannini, M P Barrett, F Dallocchio, S Hanau.   

Abstract

The mechanism of action of 6-phosphogluconate dehydrogenase with the alternative substrate 2-deoxy 6-phosphogluconate was investigated using enzymes from sheep liver, human erythrocytes and Trypanosoma brucei. The three enzymes oxidize 2-deoxy 6-phosphogluconate, but only the sheep liver enzyme releases the intermediate 2-deoxy,3-keto 6-phosphogluconate. Kinetic comparison showed that an increase in the rate of NADP+ reduction at high pH is due to increased release of the intermediate, rather than an increase in the overall reaction rate. 2-Deoxy,3-keto 6-phosphogluconate is decarboxylated by the erythrocyte and trypanosome enzymes but not the liver one in the absence of either NADPH or 6-phosphogluconate, which act as activators. The pH dependence of decarboxylation and the degree of activation suggest that 6-phosphogluconate is the activator which operates under normal assay conditions, while NADPH acts mainly by increasing the binding of the intermediate. The data suggest that the activity of 6PGDH is subjected to a two-way regulation: NADPH, which regulates the pentose phosphate pathway, inhibits the enzyme, while 6-phosphogluconate, levels of which rise when NADPH inhibition is removed, acts as an activator ensuring that 6-phosphogluconate is rapidly removed.

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Year:  1998        PMID: 9920387     DOI: 10.1016/s0167-4838(98)00222-2

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  11 in total

1.  Selective inhibition of 6-phosphogluconate dehydrogenase from Trypanosoma brucei.

Authors:  M Bertelli; E El-Bastawissy; M H Knaggs; M P Barrett; S Hanau; I H Gilbert
Journal:  J Comput Aided Mol Des       Date:  2001-05       Impact factor: 3.686

2.  6-Phosphogluconate dehydrogenase mechanism: evidence for allosteric modulation by substrate.

Authors:  Stefania Hanau; Katy Montin; Carlo Cervellati; Morena Magnani; Franco Dallocchio
Journal:  J Biol Chem       Date:  2010-05-07       Impact factor: 5.157

3.  Crystal structures of a bacterial 6-phosphogluconate dehydrogenase reveal aspects of specificity, mechanism and mode of inhibition by analogues of high-energy reaction intermediates.

Authors:  Ramasubramanian Sundaramoorthy; Jorge Iulek; Michael P Barrett; Olivier Bidet; Gian Filippo Ruda; Ian H Gilbert; William N Hunter
Journal:  FEBS J       Date:  2007-01       Impact factor: 5.542

4.  Pentose conversions support the tumorigenesis of pancreatic cancer distant metastases.

Authors:  Matthew E Bechard; Anna E Word; Amanda V Tran; Xiaojing Liu; Jason W Locasale; Oliver G McDonald
Journal:  Oncogene       Date:  2018-05-30       Impact factor: 9.867

5.  Overexpression and simple purification of the Thermotoga maritima 6-phosphogluconate dehydrogenase in Escherichia coli and its application for NADPH regeneration.

Authors:  Yiran Wang; Y-H Percival Zhang
Journal:  Microb Cell Fact       Date:  2009-06-04       Impact factor: 5.328

6.  Metabolic flux-based modularity using shortest retroactive distances.

Authors:  Gautham Vivek Sridharan; Michael Yi; Soha Hassoun; Kyongbum Lee
Journal:  BMC Syst Biol       Date:  2012-12-27

7.  Enzymatic and mRNA Transcript Response of Ovine 6-Phosphogluconate Dehydrogenase (6PGD) in Respect to Different Milk Yield.

Authors:  Stamatina Trivizaki; George P Laliotis; Iosif Bizelis; Maria A Charismiadou; Emmanuel Rogdakis
Journal:  Biochem Res Int       Date:  2009-11-16

8.  Extreme pathway analysis reveals the organizing rules of metabolic regulation.

Authors:  Yanping Xi; Fei Wang
Journal:  PLoS One       Date:  2019-02-05       Impact factor: 3.240

9.  Crystal structure of Saccharomyces cerevisiae 6-phosphogluconate dehydrogenase Gnd1.

Authors:  Weiwei He; Yi Wang; Wei Liu; Cong-Zhao Zhou
Journal:  BMC Struct Biol       Date:  2007-06-14

10.  Phosphodianion Activation of Enzymes for Catalysis of Central Metabolic Reactions.

Authors:  Patrick L Fernandez; Richard W Nagorski; Judith R Cristobal; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2021-02-09       Impact factor: 15.419

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