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Literature DB >> 9918954

GeneTree: comparing gene and species phylogenies using reconciled trees.

Abstract

SUMMARY: GeneTree is a program for comparing gene and species trees using reconciled trees. The program can compute the cost of embedding a gene tree within a species tree, visually display the location and number of gene duplications and losses, and search for optimal species trees. AVAILABILITY: The program is free and is available at ((http://taxonomy.zoology.gla.ac. uk/rod/genetree/genetree.html)).

Mesh：

Year: 1998 PMID： 9918954 DOI： 10.1093/bioinformatics/14.9.819

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

67 in total

Review 1. Evolution of genes and taxa: a primer.

Authors: J J Doyle; B S Gaut
Journal: Plant Mol Biol Date: 2000-01 Impact factor: 4.076

2. Distinct and redundant functions of mu1 medium chains of the AP-1 clathrin-associated protein complex in the nematode Caenorhabditis elegans.

Authors: J Shim; P W Sternberg; J Lee
Journal: Mol Biol Cell Date: 2000-08 Impact factor: 4.138

3. Going nuclear: gene family evolution and vertebrate phylogeny reconciled.

Authors: James A Cotton; Roderic D M Page
Journal: Proc Biol Sci Date: 2002-08-07 Impact factor: 5.349

4. Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom.

Authors: Edgar M Medina; Gary W Jones; David A Fitzpatrick
Journal: J Mol Evol Date: 2011-09-22 Impact factor: 2.395

GeneTree: comparing gene and species phylogenies using reconciled trees.

Review 1. Evolution of genes and taxa: a primer.

2. Distinct and redundant functions of mu1 medium chains of the AP-1 clathrin-associated protein complex in the nematode Caenorhabditis elegans.

3. Going nuclear: gene family evolution and vertebrate phylogeny reconciled.

4. Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom.

5. Rates and patterns of gene duplication and loss in the human genome.

6. Generalized genomic distance-based regression methodology for multilocus association analysis.

7. Ancient polymorphism and functional variation in the primate MHC-DQA1 5' cis-regulatory region.

Review 8. Homology and phylogeny and their automated inference.

9. Maximum tree: a consistent estimator of the species tree.

10. Biologically feasible gene trees, reconciliation maps and informative triples.