Literature DB >> 9918111

A fluorescent base analog for probing triple helix formation.

F Godde1, K Aupeix, S Moreau, J J Toulmé.   

Abstract

Benzo[g]quinazoline-2,4-(1H,3H)-dione (BgQ), a fluorescent thymine analog, was incorporated into an oligopyrimidine (III) able to give rise to a triple-stranded structure by clamping a purine 11-mer (I). The formation of the I-III complex resulted in both a shift of the fluorescence emission maximum and a decreased fluorescence intensity. No such variations were observed on the formation of a Watson-Crick duplex between I and the complementary strand in which a T residue was substituted for BgQ. Therefore, the fluorescence emission of BgQ can be used to selectively monitor the formation of triple helices.

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Year:  1998        PMID: 9918111     DOI: 10.1089/oli.1.1998.8.469

Source DB:  PubMed          Journal:  Antisense Nucleic Acid Drug Dev        ISSN: 1087-2906


  6 in total

Review 1.  Fluorescent analogs of biomolecular building blocks: design, properties, and applications.

Authors:  Renatus W Sinkeldam; Nicholas J Greco; Yitzhak Tor
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

2.  4-amino-1H-benzo[g]quinazoline-2-one: a fluorescent analog of cytosine to probe protonation sites in triplex forming oligonucleotides.

Authors:  F Godde; J J Toulmé; S Moreau
Journal:  Nucleic Acids Res       Date:  2000-08-01       Impact factor: 16.971

3.  DNA adopts normal B-form upon incorporation of highly fluorescent DNA base analogue tC: NMR structure and UV-Vis spectroscopy characterization.

Authors:  K Cecilia Engman; Peter Sandin; Sadie Osborne; Tom Brown; Martin Billeter; Per Lincoln; Bengt Nordén; Bo Albinsson; L Marcus Wilhelmsson
Journal:  Nucleic Acids Res       Date:  2004-09-27       Impact factor: 16.971

4.  Fluorescent properties of DNA base analogue tC upon incorporation into DNA--negligible influence of neighbouring bases on fluorescence quantum yield.

Authors:  Peter Sandin; L Marcus Wilhelmsson; Per Lincoln; Vicki E C Powers; Tom Brown; Bo Albinsson
Journal:  Nucleic Acids Res       Date:  2005-09-07       Impact factor: 16.971

5.  Characterization and use of an unprecedentedly bright and structurally non-perturbing fluorescent DNA base analogue.

Authors:  Peter Sandin; Karl Börjesson; Hong Li; Jerker Mårtensson; Tom Brown; L Marcus Wilhelmsson; Bo Albinsson
Journal:  Nucleic Acids Res       Date:  2007-11-14       Impact factor: 16.971

6.  Synthesis, oligonucleotide incorporation and fluorescence properties in DNA of a bicyclic thymine analogue.

Authors:  Christopher P Lawson; Anders F Füchtbauer; Moa S Wranne; Tristan Giraud; Thomas Floyd; Blaise Dumat; Nicolai K Andersen; Afaf H El-Sagheer; Tom Brown; Henrik Gradén; L Marcus Wilhelmsson; Morten Grøtli
Journal:  Sci Rep       Date:  2018-09-18       Impact factor: 4.379

  6 in total

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