Literature DB >> 9914254

Messages from ultrahigh resolution crystal structures.

S Longhi1, M Czjzek, C Cambillau.   

Abstract

The ever growing availability of macromolecular crystal structures determined at atomic resolution has now reached a critical size, making it possible to obtain statistically unbiased data on both protein stereochemistry and the validity of the parameters used in their refinement. Besides the determination of the precise geometry of proteins and their active sites, high resolution structures have made it possible to check the application of normal mode calculations, to calculate charge density distributions and to analyze hydration shells around protein molecules. Even if only a few structures involve protein complexes, either with ligands or prosthetic groups, the information obtained in these cases is of great interest for obtaining the physical parameters of these interactions.

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Year:  1998        PMID: 9914254     DOI: 10.1016/s0959-440x(98)80093-6

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  8 in total

1.  Accurate protein crystallography at ultra-high resolution: valence electron distribution in crambin.

Authors:  C Jelsch; M M Teeter; V Lamzin; V Pichon-Pesme; R H Blessing; C Lecomte
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

Review 2.  Neutron Laue macromolecular crystallography.

Authors:  Flora Meilleur; Dean A A Myles; Matthew P Blakeley
Journal:  Eur Biophys J       Date:  2006-08-03       Impact factor: 1.733

3.  Enzyme adaptation to alkaline pH: atomic resolution (1.08 A) structure of phosphoserine aminotransferase from Bacillus alcalophilus.

Authors:  Anatoly P Dubnovitsky; Evangelia G Kapetaniou; Anastassios C Papageorgiou
Journal:  Protein Sci       Date:  2005-01       Impact factor: 6.725

4.  Uses and Abuses of the Atomic Displacement Parameters in Structural Biology.

Authors:  Oliviero Carugo
Journal:  Methods Mol Biol       Date:  2022

5.  Conformation dependence of backbone geometry in proteins.

Authors:  Donald S Berkholz; Maxim V Shapovalov; Roland L Dunbrack; P Andrew Karplus
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

6.  Electrostatic complementarity in an aldose reductase complex from ultra-high-resolution crystallography and first-principles calculations.

Authors:  Nicolas Muzet; Benoît Guillot; Christian Jelsch; Eduardo Howard; Claude Lecomte
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-10       Impact factor: 11.205

7.  How anisotropic and isotropic atomic displacement parameters monitor protein covalent bonds rigidity: isotropic B-factors underestimate bond rigidity.

Authors:  Oliviero Carugo
Journal:  Amino Acids       Date:  2021-04-29       Impact factor: 3.520

8.  Atomic resolution structure of serine protease proteinase K at ambient temperature.

Authors:  Tetsuya Masuda; Mamoru Suzuki; Shigeyuki Inoue; Changyong Song; Takanori Nakane; Eriko Nango; Rie Tanaka; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Makina Yabashi; Bunzo Mikami; Osamu Nureki; Keiji Numata; So Iwata; Michihiro Sugahara
Journal:  Sci Rep       Date:  2017-03-31       Impact factor: 4.379

  8 in total

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