Literature DB >> 9877024

Large neural network simulations on multiple hardware platforms.

P Hammarlund1, O Ekeberg.   

Abstract

To efficiently simulate very large networks of interconnected neurons, particular consideration has to be given to the computer architecture being used. This article presents techniques for implementing simulators for large neural networks on a number of different computer architectures. The neuronal simulation task and the computer architectures of interest are first characterized, and the potential bottlenecks are highlighted. Then we describe the experience gained from adapting an existing simulator, SWIM, to two very different architectures-vector computers and multiprocessor workstations. This work lead to the implementation of a new simulation library, SPLIT, designed to allow efficient simulation of large networks on several architectures. Different computer architectures put different demands on the organization of both data structures and computations. Strict separation of such architecture considerations from the neuronal models and other simulation aspects makes it possible to construct both portable and extendible code.

Mesh:

Year:  1998        PMID: 9877024     DOI: 10.1023/a:1008893429695

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  5 in total

1.  A computer-based model for realistic simulations of neural networks. II. The segmental network generating locomotor rhythmicity in the lamprey.

Authors:  P Wallén; O Ekeberg; A Lansner; L Brodin; H Tråvén; S Grillner
Journal:  J Neurophysiol       Date:  1992-12       Impact factor: 2.714

2.  A quantitative description of membrane current and its application to conduction and excitation in nerve.

Authors:  A L HODGKIN; A F HUXLEY
Journal:  J Physiol       Date:  1952-08       Impact factor: 5.182

3.  Computer simulation of the segmental neural network generating locomotion in lamprey by using populations of network interneurons.

Authors:  J Hellgren; S Grillner; A Lansner
Journal:  Biol Cybern       Date:  1992       Impact factor: 2.086

4.  Computer simulations of NMDA and non-NMDA receptor-mediated synaptic drive: sensory and supraspinal modulation of neurons and small networks.

Authors:  H G Tråvén; L Brodin; A Lansner; O Ekeberg; P Wallén; S Grillner
Journal:  J Neurophysiol       Date:  1993-08       Impact factor: 2.714

5.  Efficient computation of branched nerve equations.

Authors:  M Hines
Journal:  Int J Biomed Comput       Date:  1984 Jan-Feb
  5 in total
  11 in total

Review 1.  Simulation of networks of spiking neurons: a review of tools and strategies.

Authors:  Romain Brette; Michelle Rudolph; Ted Carnevale; Michael Hines; David Beeman; James M Bower; Markus Diesmann; Abigail Morrison; Philip H Goodman; Frederick C Harris; Milind Zirpe; Thomas Natschläger; Dejan Pecevski; Bard Ermentrout; Mikael Djurfeldt; Anders Lansner; Olivier Rochel; Thierry Vieville; Eilif Muller; Andrew P Davison; Sami El Boustani; Alain Destexhe
Journal:  J Comput Neurosci       Date:  2007-07-12       Impact factor: 1.621

2.  KInNeSS: a modular framework for computational neuroscience.

Authors:  Massimiliano Versace; Heather Ames; Jasmin Léveillé; Bret Fortenberry; Anatoli Gorchetchnikov
Journal:  Neuroinformatics       Date:  2008-08-10

3.  Simple cellular and network control principles govern complex patterns of motor behavior.

Authors:  Alexander Kozlov; Mikael Huss; Anders Lansner; Jeanette Hellgren Kotaleski; Sten Grillner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-09       Impact factor: 11.205

4.  Three tools for the real-time simulation of embodied spiking neural networks using GPUs.

Authors:  Andreas K Fidjeland; David Gamez; Murray P Shanahan; Edgars Lazdins
Journal:  Neuroinformatics       Date:  2013-07

Review 5.  Connectivity concepts in neuronal network modeling.

Authors:  Johanna Senk; Birgit Kriener; Mikael Djurfeldt; Nicole Voges; Han-Jia Jiang; Lisa Schüttler; Gabriele Gramelsberger; Markus Diesmann; Hans E Plesser; Sacha J van Albada
Journal:  PLoS Comput Biol       Date:  2022-09-08       Impact factor: 4.779

6.  Bistable, irregular firing and population oscillations in a modular attractor memory network.

Authors:  Mikael Lundqvist; Albert Compte; Anders Lansner
Journal:  PLoS Comput Biol       Date:  2010-06-03       Impact factor: 4.475

7.  Enabling functional neural circuit simulations with distributed computing of neuromodulated plasticity.

Authors:  Wiebke Potjans; Abigail Morrison; Markus Diesmann
Journal:  Front Comput Neurosci       Date:  2010-11-23       Impact factor: 2.380

8.  Supercomputers ready for use as discovery machines for neuroscience.

Authors:  Moritz Helias; Susanne Kunkel; Gen Masumoto; Jun Igarashi; Jochen Martin Eppler; Shin Ishii; Tomoki Fukai; Abigail Morrison; Markus Diesmann
Journal:  Front Neuroinform       Date:  2012-11-02       Impact factor: 4.081

9.  [Not Available].

Authors:  Dejan Pecevski; Thomas Natschläger; Klaus Schuch
Journal:  Front Neuroinform       Date:  2009-05-27       Impact factor: 4.081

10.  A Component-Based Extension Framework for Large-Scale Parallel Simulations in NEURON.

Authors:  James G King; Michael Hines; Sean Hill; Philip H Goodman; Henry Markram; Felix Schürmann
Journal:  Front Neuroinform       Date:  2009-04-27       Impact factor: 4.081

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.